Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 5.4e-40 167.2 81 100.0
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 1.2e-34 149.4 80 85.0
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 7.5e-34 146.7 76 86.8
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 9.8e-34 146.4 80 82.5
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 2.2e-33 145.2 76 86.8
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 1.4e-32 142.5 80 81.2
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 2.4e-32 141.7 81 81.5
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 4.1e-32 141.0 80 81.2
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 5.4e-32 140.6 80 81.2
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 5.4e-32 140.6 81 80.2
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 7.0e-32 140.2 81 80.2
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 9.2e-32 139.8 80 78.8
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 9.2e-32 139.8 80 80.0
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 1.2e-31 139.4 80 80.0
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 2.0e-31 138.7 79 77.2
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 2.0e-31 138.7 79 77.2
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 2.0e-31 138.7 80 78.8
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 2.7e-31 138.3 80 80.0
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 2.7e-31 138.3 80 78.8
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 2.7e-31 138.3 80 78.8
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 3.5e-31 137.9 79 75.9
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 80.0
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 77.5
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 77.5
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 77.5
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 3.5e-31 137.9 80 77.5
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 3.5e-31 137.9 76 82.9
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 3.5e-31 137.9 79 77.2
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 4.5e-31 137.5 79 77.2
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 4.5e-31 137.5 80 77.5
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 4.5e-31 137.5 78 80.8
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 4.5e-31 137.5 80 76.2
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 5.9e-31 137.1 80 75.0
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 7.8e-31 136.7 80 77.5
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 7.8e-31 136.7 80 78.8
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 1.0e-30 136.3 79 75.9
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 1.0e-30 136.3 80 77.5
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 1.0e-30 136.3 80 77.5
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 1.0e-30 136.3 76 81.6
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 1.3e-30 136.0 79 75.9
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 1.3e-30 136.0 79 75.9
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 1.3e-30 136.0 79 75.9
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.3e-30 136.0 80 76.2
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 1.3e-30 136.0 80 76.2
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 1.3e-30 136.0 80 78.8
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 1.7e-30 135.6 81 79.0
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 1.7e-30 135.6 79 74.7
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 1.7e-30 135.6 80 77.5
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.7e-30 135.6 80 76.2
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 1.7e-30 135.6 79 77.2
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 2.3e-30 135.2 76 82.9
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 2.3e-30 135.2 78 79.5
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 2.3e-30 135.2 77 79.2
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 2.3e-30 135.2 79 75.9
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 78.8
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 78.8
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 78.8
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 78.8
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 78.8
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 2.9e-30 134.8 80 75.0
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 3.8e-30 134.4 76 78.9
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 3.8e-30 134.4 80 76.2
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 5.0e-30 134.0 80 77.5
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 5.0e-30 134.0 80 75.0
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 5.0e-30 134.0 76 80.3
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 6.6e-30 133.7 81 74.1
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 6.6e-30 133.7 80 76.2
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 8.6e-30 133.3 81 75.3
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 8.6e-30 133.3 77 80.5
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 8.6e-30 133.3 76 77.6
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 8.6e-30 133.3 76 77.6
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 8.6e-30 133.3 76 80.3
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 8.6e-30 133.3 76 80.3
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 1.1e-29 132.9 79 74.7
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 78.9
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 77.6
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.1e-29 132.9 76 80.3
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 1.1e-29 132.9 75 82.7
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.5e-29 132.5 81 74.1
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 1.5e-29 132.5 76 80.3
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 1.9e-29 132.1 80 75.0
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 1.9e-29 132.1 81 75.3
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 3.3e-29 131.3 80 75.0
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 3.3e-29 131.3 76 80.3
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 3.3e-29 131.3 78 76.9
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 3.3e-29 131.3 76 77.6
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 4.3e-29 131.0 77 76.6
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 5.6e-29 130.6 78 75.6
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 5.6e-29 130.6 78 75.6
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 5.6e-29 130.6 80 73.8
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 7.3e-29 130.2 76 78.9
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 9.5e-29 129.8 76 76.3
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 2.8e-28 128.3 80 71.2
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.6e-28 127.9 80 71.2
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.6e-28 127.9 80 71.2
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 3.6e-28 127.9 82 75.6
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 8.0e-28 126.7 74 74.3
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 1.0e-27 126.3 80 67.5
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 1.8e-27 125.6 80 70.0
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.8e-27 125.6 77 75.3
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 2.3e-27 125.2 75 77.3
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 3.0e-27 124.8 75 77.3
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 3.0e-27 124.8 75 77.3
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 4.0e-27 124.4 75 76.0
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 5.2e-27 124.0 76 75.0
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 5.2e-27 124.0 80 71.2
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 6.8e-27 123.6 75 76.0
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 8.9e-27 123.2 79 69.6
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 8.9e-27 123.2 76 72.4
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.2e-26 122.9 82 70.7
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 1.5e-26 122.5 81 67.9
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 2.0e-26 122.1 77 70.1
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.0e-26 122.1 76 72.4
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 5.7e-26 120.6 75 73.3
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 5.7e-26 120.6 76 68.4
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 9.8e-26 119.8 76 69.7
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 6.4e-25 117.1 77 70.1
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 4.1e-24 114.4 76 67.1
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 5.4e-24 114.0 80 67.5
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 5.6e-21 104.0 81 51.9
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 3.6e-20 101.3 75 61.3
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 2.3e-19 98.6 72 59.7
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 1.5e-18 95.9 80 52.5
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 2.0e-18 95.5 75 54.7
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 3.7e-17 91.3 47 83.0
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 1.9e-16 89.0 75 52.0
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 2.3e-14 82.0 71 49.3
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 2.5e-13 78.6 51 68.6
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 6.2e-12 73.9 74 45.9
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 1.2e-10 69.7 61 47.5
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.0e-10 68.9 65 56.9
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 2.4e-08 62.0 40 67.5
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 1.6e-07 59.3 38 71.1
Nitab4.5_0000217g0090 Nicotiana tabacum HOM05D005477 ORTHO05D006721 8.6e-06 53.5 40 60.0


User provided reference genes

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