Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 3.9e-241 837.8 451 100.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 6.2e-162 574.7 405 74.6
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.2e-157 560.5 401 74.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 3.9e-156 555.4 450 65.8
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 3.3e-155 552.4 404 71.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-153 546.6 405 68.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 4.0e-153 545.4 403 69.2
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 5.3e-153 545.0 403 69.5
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 1.2e-152 543.9 406 69.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 4.5e-152 542.0 406 68.7
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 7.6e-152 541.2 404 69.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 9.9e-152 540.8 403 71.2
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 9.9e-152 540.8 406 68.5
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.7e-151 540.0 405 68.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 2.9e-151 539.3 406 68.7
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 4.9e-151 538.5 398 70.4
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 6.4e-151 538.1 404 70.3
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.4e-151 537.7 403 68.5
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 8.4e-151 537.7 403 68.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 7.1e-150 534.6 418 66.7
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.2e-149 533.9 406 68.2
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.6e-149 531.9 403 67.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 7.9e-149 531.2 404 67.6
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 1.8e-148 530.0 404 67.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 3.9e-148 528.9 399 69.9
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 3.9e-148 528.9 403 67.5
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 8.7e-148 527.7 404 67.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 8.7e-148 527.7 398 69.1
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 1.9e-147 526.6 400 71.2
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.9e-147 526.6 401 72.8
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.5e-147 526.2 405 67.7
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.5e-147 526.2 405 67.7
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 4.3e-147 525.4 400 71.5
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.6e-146 523.5 400 71.5
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.6e-146 523.5 407 67.6
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.1e-146 523.1 453 62.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 4.8e-146 521.9 397 67.8
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 6.2e-146 521.5 404 67.3
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 6.2e-146 521.5 402 67.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.4e-145 520.4 399 66.7
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.4e-145 519.6 403 67.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.4e-145 519.6 399 68.2
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.0e-145 518.8 404 68.6
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.3e-145 518.5 404 68.3
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 6.9e-145 518.1 403 66.3
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.5e-144 516.9 403 66.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 1.5e-144 516.9 412 70.9
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.5e-144 516.9 404 68.3
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 2.0e-144 516.5 408 67.2
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.6e-144 516.2 409 65.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 7.6e-144 514.6 409 65.8
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 7.6e-144 514.6 401 66.3
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 9.9e-144 514.2 404 68.1
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 9.9e-144 514.2 407 66.8
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 9.9e-144 514.2 407 66.8
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 9.9e-144 514.2 403 66.3
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.3e-143 513.8 404 66.6
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.3e-143 513.8 400 67.2
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.7e-143 513.5 409 65.5
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.7e-143 513.5 406 67.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.7e-143 513.5 401 70.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.2e-143 513.1 403 67.0
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.2e-143 513.1 404 67.1
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.2e-143 513.1 409 65.8
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 2.9e-143 512.7 443 64.1
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 6.4e-143 511.5 405 67.9
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.4e-142 509.6 404 66.8
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 7.1e-142 508.1 404 65.8
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.0e-141 505.0 409 64.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 7.9e-141 504.6 402 66.2
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 7.9e-141 504.6 403 68.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.3e-140 503.8 409 64.5
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.3e-140 503.8 409 64.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-139 500.4 405 65.7
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 2.5e-139 499.6 388 66.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.3e-139 499.2 405 64.7
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 7.4e-139 498.0 404 68.6
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.1e-138 496.5 429 62.9
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 6.2e-138 495.0 400 65.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.2e-138 494.6 406 65.0
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 3.1e-137 492.7 406 63.5
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.0e-137 492.3 397 62.7
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 6.9e-137 491.5 400 64.5
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 9.0e-137 491.1 404 62.9
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.6e-136 489.6 405 64.0
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.4e-136 489.2 403 65.5
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.4e-136 489.2 403 65.5
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.4e-136 489.2 396 64.1
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.4e-136 489.2 400 64.0
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 5.8e-136 488.4 405 64.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.0e-135 487.6 405 63.0
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.0e-135 487.6 403 64.3
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.0e-135 487.6 403 64.5
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.9e-135 486.1 440 60.5
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 8.4e-135 484.6 401 64.6
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.1e-134 484.2 403 64.0
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.4e-134 483.8 406 61.8
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.2e-134 482.6 405 62.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-134 482.6 402 63.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 5.5e-134 481.9 406 63.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 7.1e-134 481.5 401 64.1
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 7.9e-133 478.0 403 64.3
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 3.0e-132 476.1 401 63.1
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 5.1e-132 475.3 403 62.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.7e-132 474.6 408 62.0
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 8.7e-132 474.6 402 63.2
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.1e-131 474.2 404 63.9
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 5.7e-131 471.9 401 60.6
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 7.4e-131 471.5 401 62.8
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 9.0e-129 464.5 403 58.6
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.2e-128 464.2 400 62.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 2.7e-125 453.0 403 60.3
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 5.1e-124 448.7 403 61.3
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.1e-123 447.6 399 59.1
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.5e-123 447.2 407 60.9
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.2e-122 443.4 415 58.1
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.5e-118 429.9 374 62.8
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 9.4e-118 427.9 403 59.1
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.5e-112 410.6 330 67.6
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.8e-106 389.8 375 57.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-105 387.9 516 46.3
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.4e-105 386.7 435 53.1
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.1e-105 386.3 293 69.6
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.0e-103 381.3 442 51.8
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 1.3e-103 380.9 398 50.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 6.5e-103 378.6 337 59.3
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.0e-99 367.1 400 51.2
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.0e-99 367.1 400 51.2
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 7.2e-94 348.6 404 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 6.1e-93 345.5 397 49.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.4e-89 334.3 405 48.1
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.9e-78 297.4 400 49.0
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 3.4e-67 260.0 402 43.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.9e-62 244.2 363 41.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 5.6e-62 242.7 203 61.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.1e-57 228.4 435 37.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.8e-53 213.8 305 41.3
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.9e-50 203.8 276 48.2
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.0e-39 168.7 151 60.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.6e-35 152.5 147 66.7
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 6.7e-31 139.4 105 64.8
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.6e-24 118.2 105 57.1
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 9.6e-22 109.0 419 27.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.4e-20 104.4 93 63.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 4.0e-20 103.6 82 70.7
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 6.5e-18 96.3 73 58.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 8.4e-18 95.9 131 44.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.4e-17 95.1 69 68.1
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.8e-13 80.9 384 24.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.8e-13 80.9 60 56.7
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 4.8e-13 80.1 451 25.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.4e-12 78.6 433 25.2
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.5e-11 75.1 68 47.1
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-08 63.9 79 53.2
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 1.4e-07 62.0 86 47.7
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 3.0e-07 60.8 62 50.0


User provided reference genes

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