Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 0.0e+00 1614.0 803 100.0
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 0.0e+00 1265.8 771 83.3
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 0.0e+00 1251.9 771 82.1
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 0.0e+00 1247.6 772 81.5
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 0.0e+00 1247.6 773 81.5
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1239.2 772 80.8
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1239.2 772 80.8
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 0.0e+00 1237.6 772 81.1
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 0.0e+00 1235.7 772 80.2
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1228.8 772 79.7
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1228.4 772 79.7
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1228.0 772 79.7
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 0.0e+00 1227.2 772 79.8
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1226.5 772 79.5
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1224.2 772 79.5
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 0.0e+00 1223.4 776 79.3
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 0.0e+00 1218.8 770 79.4
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 0.0e+00 1214.1 772 79.3
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1211.1 793 77.7
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 0.0e+00 1208.7 772 79.5
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1208.7 772 78.9
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1206.8 773 78.5
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 0.0e+00 1204.9 773 78.5
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1204.5 773 78.4
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 0.0e+00 1203.7 773 78.7
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 0.0e+00 1203.7 772 78.5
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 0.0e+00 1203.0 773 78.4
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 0.0e+00 1203.0 773 78.7
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 0.0e+00 1200.3 773 78.3
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 0.0e+00 1199.9 772 79.4
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 0.0e+00 1198.3 772 78.4
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 0.0e+00 1196.8 773 77.9
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 0.0e+00 1195.6 772 78.1
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 0.0e+00 1194.5 770 77.9
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 0.0e+00 1194.5 772 78.0
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 0.0e+00 1194.1 780 77.7
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 0.0e+00 1191.8 773 77.9
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 0.0e+00 1191.0 772 77.7
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1191.0 773 77.5
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 0.0e+00 1190.3 773 78.1
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1188.7 772 77.6
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 0.0e+00 1188.3 773 77.6
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 0.0e+00 1187.9 773 77.5
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1187.2 772 77.1
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 0.0e+00 1186.0 786 75.8
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 0.0e+00 1184.9 773 77.5
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 0.0e+00 1182.9 779 77.0
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 0.0e+00 1181.0 742 79.2
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 0.0e+00 1179.1 773 76.3
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 0.0e+00 1178.3 773 76.1
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 0.0e+00 1177.9 773 76.1
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 0.0e+00 1177.5 773 76.7
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1177.2 773 77.0
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1176.8 773 75.7
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 0.0e+00 1176.8 773 77.2
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 0.0e+00 1176.8 773 76.6
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 0.0e+00 1175.6 786 76.3
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 0.0e+00 1174.5 773 77.0
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1174.1 773 75.5
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1173.3 773 76.3
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1173.3 773 76.5
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 0.0e+00 1172.9 780 76.0
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1170.2 773 76.2
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1167.1 774 77.3
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 0.0e+00 1165.6 773 75.5
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 0.0e+00 1165.6 773 75.7
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 0.0e+00 1165.2 773 75.9
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 0.0e+00 1164.1 773 75.4
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 0.0e+00 1162.5 773 77.1
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 0.0e+00 1162.1 773 76.1
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1161.7 773 76.1
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1161.0 772 76.9
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 0.0e+00 1158.7 773 75.3
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 0.0e+00 1157.9 773 75.3
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 0.0e+00 1156.7 773 75.7
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 0.0e+00 1156.0 775 76.0
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 0.0e+00 1154.0 773 75.5
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1153.7 775 75.1
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1147.1 722 79.5
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 0.0e+00 1146.3 773 75.4
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 0.0e+00 1145.6 776 75.4
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 0.0e+00 1142.9 808 73.3
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 0.0e+00 1141.7 943 64.9
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1137.9 839 70.2
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 0.0e+00 1137.5 772 75.3
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 0.0e+00 1135.6 787 73.8
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 0.0e+00 1134.8 774 75.3
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 0.0e+00 1130.2 841 69.8
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 0.0e+00 1126.7 723 78.8
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 0.0e+00 1118.2 772 74.4
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 0.0e+00 1114.0 770 74.7
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 0.0e+00 1112.1 776 73.6
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 0.0e+00 1108.2 773 71.9
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 0.0e+00 1102.4 775 72.6
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 5.5e-312 1073.9 756 73.3
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 3.2e-310 1068.1 774 69.8
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 2.7e-309 1065.1 772 71.1
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 8.7e-308 1060.1 777 69.6
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 8.1e-306 1053.5 770 68.1
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.4e-305 1052.7 759 72.5
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 1.9e-302 1042.3 776 66.8
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 2.4e-297 1025.4 771 67.1
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.2e-296 1023.1 750 70.1
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 1.9e-291 1005.7 596 82.9
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 1.1e-286 989.9 600 82.0
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 1.5e-283 979.5 596 81.0
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 1.4e-278 963.0 728 68.3
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 1.9e-275 952.6 742 68.1
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 2.5e-270 935.6 587 77.3
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 2.5e-270 935.6 587 77.3
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 9.4e-270 933.7 817 60.3
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 1.2e-269 933.3 639 73.6
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 1.6e-269 932.9 587 77.2
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 1.6e-269 932.9 587 77.2
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 2.3e-268 929.1 597 76.4
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 7.4e-267 924.1 597 75.7
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 8.2e-266 920.6 781 61.6
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 2.2e-258 896.0 608 73.4
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.8e-257 892.9 608 72.7
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 2.2e-239 832.8 812 54.9
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.9e-238 829.7 806 55.2
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.6e-237 826.6 828 55.4
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 4.3e-230 802.0 806 56.5
Actinidia36276 Actinidia chinensis HOM05D003495 ORTHO05D004159 6.1e-229 798.1 509 79.8
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 3.0e-228 795.8 649 64.3
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 5.1e-207 725.3 427 83.6
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 1.9e-206 723.4 731 52.5
Nitab4.5_0000154g0080 Nicotiana tabacum HOM05D003495 ORTHO05D004159 4.1e-201 705.7 464 78.7
Hund20736 Selenicereus undatus HOM05D003495 ORTHO05D004159 1.1e-177 627.9 434 72.8
COL.COLO4_24184 Corchorus olitorius HOM05D003495 ORTHO05D004159 3.1e-172 609.8 380 80.5
Hma1.2p1_2186F.1_g316380 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.0e-170 604.7 497 67.0
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.5e-169 600.1 885 40.9
CiPaw.03G081200 Carya illinoinensis HOM05D003495 ORTHO05D004159 1.8e-159 567.4 377 76.9
Actinidia36277 Actinidia chinensis HOM05D003495 ORTHO05D004159 2.3e-66 258.1 178 69.1
Lj4A126T67 Lonicera japonica HOM05D003495 ORTHO05D004159 2.8e-64 251.1 151 85.4
QL02p063603 Quercus lobata HOM05D003495 ORTHO05D004159 3.7e-64 250.8 145 86.9
vmacro05604 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 9.3e-60 236.1 161 77.6
Oeu032838.1 Olea europaea HOM05D003495 ORTHO05D004159 1.1e-55 222.6 134 85.8
SHI33618 Sapria himalayana HOM05D003495 ORTHO05D004159 1.2e-54 219.2 298 43.6
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 5.8e-54 216.9 130 77.7
CAN.G497.67 Capsicum annuum HOM05D003495 ORTHO05D004159 2.5e-44 184.9 105 81.9
Hund20737 Selenicereus undatus HOM05D003495 ORTHO05D004159 5.5e-44 183.7 118 72.9
Haze_14359 Corylus avellana HOM05D003495 ORTHO05D004159 8.8e-42 176.4 169 57.4
Cre17.g703750 Chlamydomonas reinhardtii HOM05D003495 ORTHO05D004159 7.2e-36 156.8 456 26.1
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 7.2e-36 156.8 115 68.7
COL.COLO4_24181 Corchorus olitorius HOM05D003495 ORTHO05D004159 7.7e-30 136.7 70 98.6
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 1.1e-28 132.9 283 35.7
SHI33612 Sapria himalayana HOM05D003495 ORTHO05D004159 1.1e-28 132.9 93 75.3
BraA02t05288Z Brassica rapa HOM05D003495 ORTHO05D004159 4.2e-28 131.0 69 92.8
PGSC0003DMG400019864 Solanum tuberosum HOM05D003495 ORTHO05D004159 2.7e-27 128.3 67 95.5
A03p07300 Brassica napus HOM05D003495 ORTHO05D004159 5.2e-26 124.0 69 85.5
BraA03t10053Z Brassica rapa HOM05D003495 ORTHO05D004159 5.2e-26 124.0 69 85.5
C03p08370 Brassica napus HOM05D003495 ORTHO05D004159 8.8e-26 123.2 69 85.5
BolC3t13344H Brassica oleracea HOM05D003495 ORTHO05D004159 8.8e-26 123.2 69 85.5
CSS0017914 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 5.7e-25 120.6 66 80.3
CSS0034486 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 7.4e-25 120.2 66 80.3
CAN.G497.59 Capsicum annuum HOM05D003495 ORTHO05D004159 7.4e-25 120.2 69 89.9
Psat1g055400 Pisum sativum HOM05D003495 ORTHO05D004159 3.1e-23 114.8 91 61.5
SEGI_02656 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 2.9e-21 108.2 56 92.9
Lsat_1_v5_gn_4_36641 Lactuca sativa HOM05D001412 ORTHO05D002473 9.1e-15 86.7 53 73.6
PGSC0003DMG400025596 Solanum tuberosum HOM05D000072 ORTHO05D002334 3.5e-14 84.7 40 100.0
arahy.Tifrunner.gnm1.ann1.7VHQ3C Arachis hypogaea HOM05D000394 ORTHO05D013471 6.5e-13 80.5 44 90.9
CSS0030310 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D011845 6.5e-13 80.5 43 79.1
MCO10G374 Micromonas commoda HOM05D003495 ORTHO05D004159 6.8e-10 70.5 209 29.7
HanXRQChr17g0549821 Helianthus annuus HOM05D003495 ORTHO05D004159 7.5e-09 67.0 40 82.5
Prupe.3G143100 Prunus persica HOM05D000001 ORTHO05D000003 2.2e-08 65.5 35 85.7
Haze_14360 Corylus avellana HOM05D003495 ORTHO05D004159 2.0e-06 58.9 31 96.8


User provided reference genes

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