Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 1.7e-291 1005.4 525 100.0
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 6.3e-198 694.5 626 62.1
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 1.4e-197 693.3 625 61.8
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 3.1e-197 692.2 626 62.0
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 1.9e-194 682.9 626 61.7
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 4.3e-191 671.8 621 60.4
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 1.6e-190 669.8 621 60.4
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 2.2e-190 669.5 621 60.4
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 1.8e-189 666.4 625 59.7
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 3.1e-189 665.6 621 59.6
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.0e-188 662.9 625 60.8
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 3.8e-187 658.7 621 60.1
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 8.5e-187 657.5 624 59.8
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.1e-186 657.1 629 58.5
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 1.1e-186 657.1 524 69.1
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 1.4e-186 656.8 601 61.1
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 2.7e-185 652.5 625 58.2
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 1.4e-184 650.2 628 59.1
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 5.1e-184 648.3 658 56.7
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 8.2e-182 641.0 624 57.9
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.1e-181 640.6 621 58.8
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 2.4e-181 639.4 621 57.8
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 6.9e-181 637.9 643 57.1
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 1.2e-180 637.1 627 58.1
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 2.6e-180 636.0 616 58.4
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 2.2e-179 632.9 626 58.1
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 3.8e-179 632.1 627 58.1
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 5.5e-178 628.2 624 57.7
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 6.1e-177 624.8 627 57.3
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 1.0e-176 624.0 619 58.5
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 1.5e-175 620.2 624 56.2
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 2.0e-175 619.8 592 59.5
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 2.6e-175 619.4 602 58.6
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 9.7e-175 617.5 628 57.3
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 1.3e-174 617.1 624 58.2
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 2.8e-174 615.9 623 56.7
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 3.7e-174 615.5 623 56.7
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 6.3e-174 614.8 600 59.2
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 2.6e-172 609.4 624 57.2
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 3.5e-172 609.0 620 56.8
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 5.9e-172 608.2 623 56.2
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 5.9e-172 608.2 613 58.1
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 2.2e-171 606.3 623 57.0
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 1.5e-170 603.6 631 55.9
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.9e-170 603.2 624 56.2
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 3.2e-170 602.4 620 55.3
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 4.2e-170 602.1 626 56.7
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 4.2e-170 602.1 627 56.3
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 5.5e-170 601.7 629 56.4
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.2e-169 600.5 625 55.4
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 3.6e-169 599.0 624 56.6
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 4.7e-169 598.6 618 56.0
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 8.0e-169 597.8 624 56.4
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 1.0e-168 597.4 623 55.4
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 1.0e-168 597.4 625 55.0
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.4e-168 597.0 624 56.1
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.0e-168 595.5 624 56.2
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.0e-168 595.5 624 56.2
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 5.2e-168 595.1 618 56.1
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 2.0e-167 593.2 622 55.3
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 7.5e-167 591.3 613 55.6
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 1.3e-166 590.5 616 55.4
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 4.8e-166 588.6 624 55.4
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.8e-166 588.6 624 56.2
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.1e-165 587.4 623 56.2
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 1.4e-165 587.0 627 54.2
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 1.4e-165 587.0 624 56.1
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.8e-165 586.6 630 55.7
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 3.1e-165 585.9 622 54.8
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 4.1e-165 585.5 669 51.6
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 5.3e-165 585.1 617 54.1
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 7.0e-165 584.7 620 55.6
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 2.7e-164 582.8 613 57.6
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 2.7e-164 582.8 618 56.0
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 1.0e-163 580.9 627 54.1
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 3.2e-162 575.9 621 54.3
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 5.5e-162 575.1 617 54.3
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 1.2e-161 573.9 620 54.2
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 2.1e-161 573.2 622 53.7
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 3.6e-161 572.4 621 54.1
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 3.6e-161 572.4 626 53.5
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 6.1e-161 571.6 621 53.6
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 6.1e-161 571.6 619 55.9
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 1.8e-160 570.1 617 54.9
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 3.0e-160 569.3 621 53.5
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 3.0e-160 569.3 622 54.2
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 8.8e-160 567.8 622 53.9
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 1.5e-159 567.0 625 53.1
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 4.4e-159 565.5 622 53.5
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 5.7e-159 565.1 626 53.5
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 5.7e-159 565.1 621 54.1
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 1.3e-158 563.9 621 53.0
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 4.8e-158 562.0 623 53.9
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 6.3e-158 561.6 619 52.7
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 6.3e-158 561.6 629 54.5
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 1.1e-157 560.8 618 54.9
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 3.1e-157 559.3 617 54.1
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 5.4e-157 558.5 619 52.3
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 1.6e-156 557.0 619 52.0
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 4.5e-156 555.4 619 52.0
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 4.5e-156 555.4 625 53.4
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 7.7e-156 554.7 642 52.2
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 1.0e-155 554.3 626 52.7
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 1.0e-155 554.3 619 52.0
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.3e-155 553.9 642 52.0
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 5.0e-155 552.0 642 51.9
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 2.5e-154 549.7 633 52.4
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 2.7e-153 546.2 617 52.5
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.8e-152 543.5 633 52.0
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 1.8e-152 543.5 594 54.9
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 2.0e-148 530.0 629 51.8
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 3.5e-148 529.3 627 50.2
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 1.7e-139 500.4 634 49.2
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 5.6e-138 495.4 563 52.9
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 6.8e-136 488.4 633 47.4
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 7.8e-132 474.9 628 48.1
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 2.5e-130 469.9 634 47.5
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 2.5e-130 469.9 631 48.3
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 1.1e-128 464.5 537 54.4
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 2.7e-124 449.9 607 48.4
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 7.6e-119 431.8 346 67.3
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.9e-118 429.1 568 47.7
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 1.0e-115 421.4 500 53.6
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 4.7e-113 412.5 364 62.1
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 2.8e-105 386.7 344 60.2
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 6.2e-105 385.6 646 39.9
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 8.1e-105 385.2 638 39.7
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 3.1e-104 383.3 266 79.3
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 2.0e-103 380.6 623 38.7
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.9e-102 376.7 637 39.9
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 3.9e-99 366.3 635 39.4
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 9.9e-95 351.7 344 59.6
unitig_0.g2769 Utricularia gibba HOM05D004139 ORTHO05D004873 7.4e-90 335.5 183 96.2
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 4.5e-87 326.2 348 53.7
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.0e-83 315.1 350 53.4
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 1.4e-77 294.7 354 52.8
SHI13391 Sapria himalayana HOM05D004139 ORTHO05D004873 3.8e-62 243.4 191 65.4
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.4e-61 241.5 376 39.9
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.4e-59 235.0 325 42.5
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 8.2e-57 225.7 175 65.7
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.4e-56 224.9 132 78.8
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 9.1e-56 222.2 479 37.0
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 1.2e-52 211.8 157 65.6
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 5.7e-50 203.0 435 39.1
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 3.7e-49 200.3 318 40.6
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.2e-44 185.3 253 49.8
Hma1.2p1_0018F.1_g013550 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 4.0e-43 180.3 197 56.9
RcHm_v2.0_Chr1g0358061 Rosa chinensis HOM05D004139 ORTHO05D004873 6.3e-41 172.9 134 64.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.1e-40 172.2 134 64.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.6e-39 168.3 134 63.4
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 4.5e-39 166.8 316 36.7
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 5.2e-35 153.3 97 74.2
RcHm_v2.0_Chr1g0357961 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-25 122.1 142 54.9
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 4.3e-21 107.1 63 76.2
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 1.1e-19 102.4 262 33.6
FAN06G0709 Fragaria x ananassa HOM05D004139 ORTHO05D000018 2.3e-19 101.3 121 46.3
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 2.3e-19 101.3 61 75.4
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 1.3e-17 95.5 59 72.9
RcHm_v2.0_Chr1g0358151 Rosa chinensis HOM05D004139 ORTHO05D004873 5.0e-14 83.6 61 70.5
RcHm_v2.0_Chr1g0358071 Rosa chinensis HOM05D004139 ORTHO05D004873 8.6e-14 82.8 60 71.7
PRCOL_00003376 Prasinoderma coloniale HOM05D004139 ORTHO05D004873 2.5e-13 81.3 182 36.3
RcHm_v2.0_Chr7g0215581 Rosa chinensis HOM05D004139 ORTHO05D004873 6.2e-12 76.6 63 60.3
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 3.1e-11 74.3 50 66.0
RcHm_v2.0_Chr1g0358011 Rosa chinensis HOM05D004139 ORTHO05D004873 2.6e-10 71.2 43 79.1
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 3.4e-10 70.9 68 52.9
RcHm_v2.0_Chr1g0358111 Rosa chinensis HOM05D004139 ORTHO05D004873 2.2e-09 68.2 43 76.7
RcHm_v2.0_Chr1g0358161 Rosa chinensis HOM05D004139 ORTHO05D004873 8.6e-06 56.2 36 75.0


User provided reference genes

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