Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 3.7e-124 448.4 248 100.0
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 8.3e-84 314.3 247 64.4
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 5.4e-83 311.6 252 71.0
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 6.0e-82 308.1 252 70.2
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 1.5e-80 303.5 251 70.1
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 8.0e-79 297.7 249 69.1
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 6.8e-78 294.7 181 75.7
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 3.4e-77 292.4 250 69.2
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 4.4e-77 292.0 181 76.2
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 7.5e-77 291.2 249 66.3
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 9.8e-77 290.8 181 75.7
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.3e-76 290.4 181 75.7
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.7e-76 288.9 253 69.2
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 3.7e-76 288.9 249 69.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 6.4e-76 288.1 181 75.1
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 8.3e-76 287.7 249 68.3
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.1e-75 287.3 247 69.2
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.9e-75 286.6 181 76.8
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 3.2e-75 285.8 249 67.9
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 3.2e-75 285.8 181 73.5
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 7.0e-75 284.6 181 75.1
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 9.2e-75 284.3 244 65.6
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 9.2e-75 284.3 171 79.5
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 1.2e-74 283.9 181 75.7
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.2e-74 283.9 181 76.2
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 2.1e-74 283.1 248 69.0
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 2.7e-74 282.7 249 63.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 2.7e-74 282.7 250 66.8
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 3.5e-74 282.3 250 60.0
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 3.5e-74 282.3 181 73.5
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 1.3e-73 280.4 181 75.1
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 3.0e-73 279.3 181 73.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.0e-73 279.3 180 73.3
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.0e-73 279.3 181 74.6
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 5.1e-73 278.5 179 74.9
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 5.1e-73 278.5 246 67.9
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 5.1e-73 278.5 180 72.8
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 6.6e-73 278.1 248 66.9
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 8.6e-73 277.7 181 72.9
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 8.6e-73 277.7 251 63.3
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.5e-72 276.9 260 55.8
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.5e-72 276.2 181 73.5
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 3.3e-72 275.8 248 66.1
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 4.3e-72 275.4 248 67.3
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 4.3e-72 275.4 181 72.4
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 7.3e-72 274.6 182 74.2
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 9.5e-72 274.2 247 65.6
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 1.2e-71 273.9 243 66.7
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.6e-71 273.5 181 72.4
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.6e-71 273.5 257 66.9
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 1.6e-71 273.5 182 71.4
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 2.1e-71 273.1 181 71.8
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.8e-71 272.7 246 65.9
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 2.8e-71 272.7 181 73.5
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 4.7e-71 271.9 181 74.6
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 1.4e-70 270.4 181 71.3
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.4e-70 270.4 280 60.7
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 2.3e-70 269.6 181 72.4
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 3.1e-70 269.2 182 73.1
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 5.2e-70 268.5 247 63.2
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 6.8e-70 268.1 247 65.6
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 8.9e-70 267.7 248 57.7
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.5e-69 266.9 299 57.5
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 2.6e-69 266.2 180 71.1
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 2.6e-69 266.2 255 63.5
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 3.4e-69 265.8 163 78.5
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.7e-68 263.5 247 62.8
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 1.7e-68 263.5 180 68.9
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 2.2e-68 263.1 247 62.8
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.9e-68 262.7 173 73.4
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 1.1e-67 260.8 255 61.2
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 1.4e-67 260.4 181 69.6
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.4e-67 259.6 172 72.7
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 5.4e-67 258.5 171 72.5
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 5.4e-67 258.5 267 61.4
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.5e-66 255.8 277 59.9
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.0e-65 254.2 211 60.7
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 3.0e-65 252.7 213 60.1
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 3.9e-65 252.3 212 62.7
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 5.1e-65 251.9 204 63.2
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.1e-62 244.2 175 69.1
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 2.4e-62 243.0 151 74.2
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 2.0e-61 240.0 231 55.4
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 9.9e-61 237.7 164 70.7
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.9e-59 233.4 148 75.0
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 4.2e-59 232.3 153 73.9
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 5.4e-59 231.9 181 60.8
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 1.6e-58 230.3 186 61.3
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.3e-57 227.3 198 60.1
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.6e-55 220.3 197 58.9
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.8e-55 219.5 188 64.9
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 2.8e-55 219.5 188 64.9
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 2.4e-54 216.5 148 68.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.0e-54 215.7 184 58.7
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.4e-53 212.2 130 76.9
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 4.2e-51 205.7 278 45.7
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 9.3e-51 204.5 269 43.9
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 6.0e-50 201.8 181 59.1
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 4.3e-48 195.7 188 52.7
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 4.3e-48 195.7 128 74.2
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 3.1e-46 189.5 157 61.8
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 5.4e-43 178.7 342 36.0
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.8e-41 173.7 118 71.2
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 6.7e-41 171.8 173 68.2
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 3.3e-40 169.5 100 76.0
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 4.6e-34 149.1 117 62.4
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 3.0e-33 146.4 120 60.8
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 6.2e-31 138.7 82 75.6
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 4.5e-29 132.5 148 47.3
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 1.9e-24 117.1 106 58.5
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 5.5e-19 99.0 98 55.1
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-18 97.8 111 49.5
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 2.6e-13 80.1 119 52.9
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 6.7e-09 65.5 34 91.2
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 1.3e-07 61.2 32 81.2
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 1.1e-06 58.2 34 79.4


User provided reference genes

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