Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 4.8e-160 567.8 286 100.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 9.6e-92 340.9 281 62.3
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 8.1e-91 337.8 281 61.6
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 3.3e-84 315.8 281 59.4
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 2.6e-65 253.1 283 50.2
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.5e-63 246.5 298 47.7
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.2e-63 246.1 297 48.1
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 4.6e-62 242.3 292 50.0
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 7.9e-62 241.5 292 50.0
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 3.0e-61 239.6 290 47.6
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 1.1e-60 237.7 284 49.3
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 9.6e-60 234.6 287 45.3
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-59 233.0 286 45.8
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 3.7e-59 232.6 306 45.4
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 1.8e-58 230.3 306 45.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 6.9e-58 228.4 282 45.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 1.5e-57 227.3 321 43.6
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 5.9e-57 225.3 309 43.4
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 5.5e-55 218.8 311 42.1
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 7.9e-54 214.9 310 42.9
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 1.8e-53 213.8 305 43.3
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 2.3e-53 213.4 304 42.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 2.3e-53 213.4 287 43.9
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.3e-53 213.4 299 43.8
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 3.9e-53 212.6 301 43.5
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 5.1e-53 212.2 321 41.4
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 1.1e-52 211.1 317 42.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 1.1e-52 211.1 311 40.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 1.5e-52 210.7 313 41.5
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.5e-52 209.9 304 43.4
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 2.5e-52 209.9 288 42.7
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 7.4e-52 208.4 317 41.6
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 1.6e-51 207.2 282 42.9
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 8.2e-51 204.9 320 42.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.1e-50 204.5 333 42.0
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 1.8e-50 203.8 288 43.1
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 3.1e-50 203.0 279 45.2
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 5.3e-50 202.2 322 40.7
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 5.3e-50 202.2 310 41.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 5.3e-50 202.2 311 40.5
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 5.3e-50 202.2 311 40.5
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 1.2e-49 201.1 301 40.9
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.6e-49 199.9 313 39.3
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 4.5e-49 199.1 307 41.4
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 1.3e-48 197.6 317 41.6
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 2.9e-48 196.4 356 37.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 2.9e-48 196.4 300 40.3
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 3.8e-48 196.1 287 42.2
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 1.9e-47 193.7 306 39.9
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 4.2e-47 192.6 317 38.8
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 4.2e-47 192.6 287 39.7
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 5.5e-47 192.2 312 39.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 5.5e-47 192.2 319 38.9
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 2.1e-46 190.3 319 38.6
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 2.1e-46 190.3 280 41.4
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 4.6e-46 189.1 286 39.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 4.6e-46 189.1 324 39.5
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 7.9e-46 188.3 286 39.2
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 1.4e-45 187.6 279 40.5
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 3.0e-45 186.4 291 38.8
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 5.1e-45 185.7 296 39.2
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 8.8e-45 184.9 313 38.3
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 1.1e-44 184.5 287 42.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.1e-44 184.5 277 40.1
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 4.4e-44 182.6 300 39.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 4.4e-44 182.6 279 39.8
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 1.7e-43 180.6 305 38.4
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.8e-42 177.2 285 41.4
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 1.8e-42 177.2 321 38.0
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 2.4e-42 176.8 321 37.4
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 6.9e-42 175.3 288 43.8
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 9.1e-42 174.9 288 43.1
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 9.1e-42 174.9 308 36.4
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 2.0e-41 173.7 289 40.1
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 1.7e-40 170.6 278 37.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 2.2e-40 170.2 276 36.6
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 2.2e-40 170.2 285 41.8
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.9e-40 169.9 295 41.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 5.0e-40 169.1 278 37.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.1e-36 157.9 278 38.5
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 9.7e-36 154.8 289 34.9
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 2.6e-33 146.7 283 37.1
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 8.2e-27 125.2 318 31.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 4.5e-25 119.4 280 31.1
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 3.7e-19 99.8 103 54.4
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.1e-15 88.2 117 42.7
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 2.1e-14 84.0 120 37.5
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 4.7e-14 82.8 63 65.1
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 1.2e-12 78.2 298 27.2
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 3.4e-12 76.6 53 66.0
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 2.8e-11 73.6 80 51.2
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 3.3e-07 60.1 76 43.4


User provided reference genes

Program Settings