Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.2e-50 201.4 102 100.0
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 8.8e-32 140.2 80 86.2
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 3.0e-24 115.2 82 69.5
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.5e-23 112.8 82 68.3
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.5e-23 112.8 85 69.4
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 3.4e-23 111.7 82 65.9
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 5.7e-23 110.9 82 68.3
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 1.3e-22 109.8 85 69.4
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.3e-22 109.8 82 67.1
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 1.7e-22 109.4 82 72.0
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.7e-22 108.2 85 69.4
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 3.7e-22 108.2 85 69.4
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 3.7e-22 108.2 84 66.7
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 4.9e-22 107.8 65 76.9
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 6.3e-22 107.5 75 70.7
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 6.3e-22 107.5 82 64.6
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.1e-21 106.7 83 68.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.1e-21 106.7 82 63.4
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.4e-21 106.3 82 65.9
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.4e-21 106.3 82 67.1
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 2.4e-21 105.5 85 64.7
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 3.1e-21 105.1 85 67.1
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 3.1e-21 105.1 82 67.1
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 3.1e-21 105.1 82 65.9
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 3.1e-21 105.1 82 63.4
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.1e-21 105.1 83 66.3
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 3.1e-21 105.1 83 66.3
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.1e-21 105.1 91 60.4
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.1e-21 105.1 91 60.4
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 3.1e-21 105.1 62 83.9
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 4.1e-21 104.8 93 60.2
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 4.1e-21 104.8 85 64.7
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 5.4e-21 104.4 92 56.5
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 5.4e-21 104.4 92 56.5
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 5.4e-21 104.4 92 57.6
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 7.0e-21 104.0 92 57.6
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 7.0e-21 104.0 82 65.9
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 9.2e-21 103.6 85 63.5
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-20 103.2 92 56.5
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 1.2e-20 103.2 92 56.5
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 1.2e-20 103.2 92 58.7
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 1.2e-20 103.2 82 62.2
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-20 103.2 82 62.2
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 1.2e-20 103.2 83 66.3
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 1.2e-20 103.2 75 66.7
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-20 102.8 82 62.2
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-20 102.8 82 62.2
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.0e-20 102.4 92 56.5
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.0e-20 102.4 82 59.8
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 2.0e-20 102.4 92 58.7
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 2.0e-20 102.4 85 62.4
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 2.0e-20 102.4 92 57.6
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-20 102.4 83 65.1
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.0e-20 102.4 84 65.5
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-20 102.1 92 55.4
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 2.7e-20 102.1 92 55.4
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.7e-20 102.1 82 62.2
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 2.7e-20 102.1 82 62.2
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-20 101.7 92 54.3
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-20 101.7 92 54.3
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-20 101.7 92 54.3
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 3.5e-20 101.7 92 56.5
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 3.5e-20 101.7 85 63.5
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 3.5e-20 101.7 83 66.3
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 3.5e-20 101.7 63 79.4
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 3.5e-20 101.7 84 64.3
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 3.5e-20 101.7 85 64.7
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-20 101.3 93 58.1
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 4.5e-20 101.3 92 55.4
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 4.5e-20 101.3 92 55.4
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 4.5e-20 101.3 92 55.4
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 4.5e-20 101.3 92 55.4
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 4.5e-20 101.3 92 55.4
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.5e-20 101.3 83 63.9
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.5e-20 101.3 83 63.9
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.5e-20 101.3 83 62.7
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 4.5e-20 101.3 63 77.8
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 4.5e-20 101.3 83 67.5
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 5.9e-20 100.9 82 59.8
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 5.9e-20 100.9 92 55.4
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.9e-20 100.9 83 61.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 7.8e-20 100.5 93 57.0
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 7.8e-20 100.5 83 63.9
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 7.8e-20 100.5 84 64.3
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-19 100.1 62 75.8
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.7e-19 99.4 81 65.4
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.3e-19 99.0 83 62.7
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.3e-19 99.0 62 74.2
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 3.8e-19 98.2 93 55.9
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 5.0e-19 97.8 82 62.2
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 5.0e-19 97.8 83 65.1
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 5.0e-19 97.8 83 62.7
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 5.0e-19 97.8 77 62.3
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 6.6e-19 97.4 94 56.4
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 6.6e-19 97.4 83 62.7
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 6.6e-19 97.4 86 61.6
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 8.6e-19 97.1 62 77.4
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.6e-19 97.1 85 60.0
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.6e-19 97.1 85 60.0
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 8.6e-19 97.1 85 61.2
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 8.6e-19 97.1 85 61.2
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.1e-18 96.7 82 61.0
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 1.1e-18 96.7 83 61.4
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.9e-18 95.9 83 62.7
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.9e-18 95.9 59 76.3
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 1.9e-18 95.9 85 64.7
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.9e-18 95.9 80 65.0
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.9e-18 95.9 61 73.8
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 2.5e-18 95.5 83 61.4
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.5e-18 95.5 83 59.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 3.3e-18 95.1 89 58.4
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 3.3e-18 95.1 82 59.8
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.3e-18 95.1 83 63.9
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.3e-18 94.7 86 60.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 4.3e-18 94.7 72 62.5
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.6e-18 94.4 85 62.4
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 5.6e-18 94.4 66 74.2
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 5.6e-18 94.4 61 75.4
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.6e-18 94.4 61 68.9
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 5.6e-18 94.4 80 62.5
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 5.6e-18 94.4 97 57.7
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 7.3e-18 94.0 93 55.9
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 7.3e-18 94.0 74 63.5
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 7.3e-18 94.0 97 55.7
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.6e-17 92.8 93 53.8
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-17 92.8 59 74.6
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-17 92.8 59 74.6
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-17 92.8 59 74.6
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.1e-17 92.4 70 70.0
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 2.8e-17 92.0 59 76.3
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 2.8e-17 92.0 62 71.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 2.8e-17 92.0 62 72.6
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 3.6e-17 91.7 61 72.1
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 6.1e-17 90.9 84 58.3
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 6.1e-17 90.9 87 55.2
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 6.1e-17 90.9 62 72.6
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 8.0e-17 90.5 84 58.3
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 8.0e-17 90.5 57 78.9
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 8.0e-17 90.5 84 59.5
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 1.4e-16 89.7 84 59.5
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 4.0e-16 88.2 55 74.5
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 6.8e-16 87.4 46 84.8
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.5e-15 86.3 82 58.5
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.0e-15 85.9 82 58.5
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 2.6e-15 85.5 87 56.3
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 7.5e-15 84.0 60 66.7
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 4.9e-14 81.3 70 52.9
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 6.4e-14 80.9 92 50.0
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 2.4e-13 79.0 64 57.8
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 6.0e-12 74.3 58 58.6
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.0e-11 73.6 49 69.4
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 3.4e-07 58.5 73 39.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.7e-06 56.2 62 46.8


User provided reference genes

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