Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.6e-100 368.2 183 100.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 7.8e-79 297.4 182 79.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.8e-67 259.6 182 68.7
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 7.5e-66 254.2 182 69.8
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.8e-63 244.2 185 66.5
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.9e-62 241.9 182 64.8
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 5.0e-62 241.5 183 66.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.5e-61 240.0 183 65.6
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.5e-61 240.0 183 62.3
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.3e-61 238.8 183 62.8
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.5e-61 237.3 183 64.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.2e-60 236.9 183 61.7
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.6e-60 236.5 183 61.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.1e-60 236.1 183 64.5
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 3.6e-60 235.3 183 63.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.7e-60 235.0 181 64.1
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 6.2e-60 234.6 182 63.7
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.2e-60 234.6 183 60.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 8.1e-60 234.2 183 61.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.1e-59 233.8 184 64.7
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.4e-59 233.4 183 65.6
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 1.4e-59 233.4 183 64.5
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-59 233.0 183 63.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-59 232.6 183 63.4
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 3.1e-59 232.3 183 62.8
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-59 232.3 183 63.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 4.0e-59 231.9 183 62.3
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 5.2e-59 231.5 183 63.9
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 5.2e-59 231.5 183 62.3
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 5.2e-59 231.5 183 62.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 8.9e-59 230.7 180 60.0
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.2e-58 230.3 183 63.9
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.2e-58 230.3 183 63.9
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 2.6e-58 229.2 186 62.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.8e-58 228.0 183 64.5
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 5.8e-58 228.0 181 61.9
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 7.5e-58 227.6 187 62.0
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 7.5e-58 227.6 184 62.0
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.9e-58 227.3 183 62.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.9e-58 227.3 183 62.8
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 9.9e-58 227.3 183 60.7
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.3e-57 226.9 183 61.7
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.7e-57 226.5 183 61.7
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-57 226.1 183 62.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 2.2e-57 226.1 183 62.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.9e-57 225.7 183 61.2
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 2.9e-57 225.7 182 60.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.9e-57 225.7 183 59.6
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 3.7e-57 225.3 181 63.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.7e-57 225.3 183 59.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 4.9e-57 224.9 175 61.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.9e-57 224.9 183 60.1
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 8.3e-57 224.2 183 61.7
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 8.3e-57 224.2 183 59.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.1e-56 223.8 173 62.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 1.4e-56 223.4 184 62.0
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.4e-56 222.6 186 60.8
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.2e-56 222.2 186 60.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.1e-56 221.9 182 59.3
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 4.1e-56 221.9 182 59.3
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.4e-56 221.5 183 60.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 7.1e-56 221.1 182 58.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 7.1e-56 221.1 182 59.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 9.2e-56 220.7 186 62.9
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.6e-55 219.9 183 62.3
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.1e-55 219.5 183 61.2
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 2.7e-55 219.2 183 59.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.7e-55 219.2 183 61.7
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.7e-55 219.2 183 60.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.7e-55 219.2 183 60.1
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.5e-55 218.8 183 60.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.6e-55 218.4 184 61.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.0e-55 218.0 183 59.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.0e-54 217.2 184 61.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.0e-54 217.2 183 60.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.3e-54 216.1 186 62.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 2.3e-54 216.1 183 57.9
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-54 216.1 183 60.7
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.3e-54 216.1 183 60.7
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.0e-54 215.7 183 60.1
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.0e-54 215.7 185 60.5
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.9e-54 215.3 180 61.7
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 3.9e-54 215.3 183 61.7
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.9e-54 215.3 198 57.1
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.9e-54 215.3 180 58.3
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.1e-54 214.9 164 65.2
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.3e-53 212.2 186 61.3
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 4.3e-53 211.8 183 57.4
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.6e-53 211.5 163 64.4
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.6e-53 211.5 163 64.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 5.6e-53 211.5 184 59.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 7.3e-53 211.1 184 57.1
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.2e-52 210.3 183 57.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.2e-52 210.3 183 57.9
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.2e-52 210.3 183 56.8
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.6e-52 209.9 214 53.7
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.6e-52 209.9 186 57.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-52 209.9 183 56.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.1e-52 209.5 186 59.1
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.1e-52 209.5 183 56.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.6e-52 208.8 185 58.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 4.7e-52 208.4 183 59.0
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 6.2e-52 208.0 183 57.4
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.1e-51 207.2 183 56.3
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.1e-51 207.2 220 53.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-51 207.2 148 65.5
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-51 206.8 183 55.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-51 206.8 183 55.7
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.4e-51 206.8 183 56.8
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-51 206.8 163 63.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.8e-51 206.5 186 55.9
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.4e-51 206.1 187 58.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 3.1e-51 205.7 188 55.9
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 4.0e-51 205.3 198 56.1
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 5.2e-51 204.9 183 56.3
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.2e-50 203.8 149 62.4
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-50 203.4 195 55.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.5e-50 203.4 187 58.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.5e-50 203.4 166 62.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 3.4e-50 202.2 183 55.2
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 4.4e-50 201.8 186 57.5
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.7e-49 199.9 164 62.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-48 197.2 163 58.3
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-48 196.8 186 55.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.4e-48 196.1 163 59.5
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 2.4e-48 196.1 184 53.8
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.2e-48 195.7 187 54.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 5.4e-48 194.9 185 57.3
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.6e-47 193.4 186 55.4
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.5e-47 192.2 186 54.3
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.3e-46 190.3 163 59.5
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 2.3e-46 189.5 149 61.7
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.1e-46 188.3 158 62.0
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 6.6e-46 188.0 186 55.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 2.5e-45 186.0 167 58.1
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.5e-45 186.0 174 54.0
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.7e-44 181.8 215 47.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.1e-44 181.0 162 56.2
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 2.4e-43 179.5 151 58.3
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.2e-43 178.3 149 56.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.2e-42 177.2 162 54.9
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.6e-42 176.0 167 53.9
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 9.9e-42 174.1 165 54.5
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.7e-41 173.3 160 55.6
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.1e-40 167.9 188 53.2
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 4.6e-39 165.2 174 51.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.7e-38 163.3 109 70.6
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 3.9e-38 162.2 150 52.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 7.6e-34 147.9 165 46.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 9.9e-34 147.5 165 46.7
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.3e-33 147.1 165 46.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.6e-31 140.2 151 47.0
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.5e-29 132.9 185 44.9
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-27 126.3 120 50.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.3e-20 104.0 130 45.4
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.8e-19 100.1 167 35.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 4.3e-13 79.0 107 45.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 5.7e-13 78.6 171 33.3
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 5.5e-08 62.0 121 29.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.6e-07 60.5 183 32.2
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.6e-07 58.9 145 28.3
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 6.1e-07 58.5 126 26.2


User provided reference genes

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