Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21364 Utricularia gibba HOM05D002988 ORTHO05D003479 1.1e-72 276.6 148 100.0
SGA_v2.0_scaffold96G29042 Striga asiatica HOM05D002988 ORTHO05D003479 1.5e-35 153.3 107 83.2
MSTRG.11903 Avicennia marina HOM05D002988 ORTHO05D003479 2.1e-34 149.4 111 78.4
MSTRG.13895 Avicennia marina HOM05D002988 ORTHO05D003479 6.1e-34 147.9 107 79.4
Nitab4.5_0001632g0050 Nicotiana tabacum HOM05D002988 ORTHO05D003479 1.0e-33 147.1 136 64.7
Solyc06g066320.3 Solanum lycopersicum HOM05D002988 ORTHO05D003479 2.3e-33 146.0 107 76.6
Sopen06g021700 Solanum pennellii HOM05D002988 ORTHO05D003479 2.3e-33 146.0 107 76.6
PGSC0003DMG400016781 Solanum tuberosum HOM05D002988 ORTHO05D003479 2.3e-33 146.0 107 76.6
Nitab4.5_0002429g0010 Nicotiana tabacum HOM05D002988 ORTHO05D003479 3.0e-33 145.6 107 75.7
Cc08_g03550 Coffea canephora HOM05D002988 ORTHO05D003479 4.0e-33 145.2 107 77.6
ECA246G1645 Erigeron canadensis HOM05D002988 ORTHO05D003479 5.2e-33 144.8 107 77.6
CAN.G474.23 Capsicum annuum HOM05D002988 ORTHO05D003479 1.5e-32 143.3 107 74.8
Peaxi162Scf00185g01120 Petunia axillaris HOM05D002988 ORTHO05D003479 1.5e-32 143.3 136 64.0
Lsat_1_v5_gn_3_20800 Lactuca sativa HOM05D002988 ORTHO05D003479 2.6e-32 142.5 133 62.4
Lj2C229T12 Lonicera japonica HOM05D002988 ORTHO05D003479 6.4e-31 137.9 107 74.8
CSS0041130 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.4e-30 136.7 107 73.8
Dinv25275 Davidia involucrata HOM05D002988 ORTHO05D003479 1.4e-30 136.7 107 72.9
Hma1.2p1_1645F.1_g295370 Hydrangea macrophylla HOM05D002988 ORTHO05D003479 1.4e-30 136.7 107 72.9
vmacro00266 Vaccinium macrocarpon HOM05D002988 ORTHO05D003479 2.4e-30 136.0 105 74.3
SalBow8G3553 Salvia bowleyana HOM05D002988 ORTHO05D003479 9.2e-30 134.0 112 71.4
Nn2g11139 Nelumbo nucifera HOM05D002988 ORTHO05D003479 1.2e-29 133.7 108 68.5
SalBow1G6715 Salvia bowleyana HOM05D002988 ORTHO05D003479 1.2e-29 133.7 105 73.3
TAR623G1658 Trochodendron aralioides HOM05D002988 ORTHO05D003479 1.2e-29 133.7 107 71.0
HanXRQChr06g0172711 Helianthus annuus HOM05D002988 ORTHO05D003479 1.6e-29 133.3 107 72.0
Rhsim11G0032300 Rhododendron simsii HOM05D002988 ORTHO05D003479 1.6e-29 133.3 105 73.3
CsaV3_3G048800 Cucumis sativus L. HOM05D002988 ORTHO05D003479 2.0e-29 132.9 105 73.3
GSVIVG01011111001 Vitis vinifera HOM05D002988 ORTHO05D003479 2.7e-29 132.5 107 72.0
FvH4_5g23250 Fragaria vesca HOM05D002988 ORTHO05D003479 3.5e-29 132.1 106 72.6
FAN13G1166 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.5e-29 132.1 106 72.6
FAN18G3031 Fragaria x ananassa HOM05D002988 ORTHO05D003479 3.5e-29 132.1 106 72.6
RcHm_v2.0_Chr7g0212171 Rosa chinensis HOM05D002988 ORTHO05D003479 3.5e-29 132.1 106 72.6
Migut.E01320 Erythranthe guttata HOM05D002988 ORTHO05D003479 6.0e-29 131.3 107 71.0
TWI81G0561 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 1.3e-28 130.2 105 72.4
CSS0006732 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.7e-28 129.8 105 71.4
FAN04G0340 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.7e-28 129.8 106 71.7
FAN08G0201 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.7e-28 129.8 106 71.7
Oeu017089.1 Olea europaea HOM05D002988 ORTHO05D003479 2.3e-28 129.4 107 72.9
Prupe.5G026700 Prunus persica HOM05D002988 ORTHO05D003479 3.0e-28 129.0 107 71.0
Sed0002043 Sechium edule HOM05D002988 ORTHO05D003479 3.0e-28 129.0 105 71.4
TAR369G1079 Trochodendron aralioides HOM05D002988 ORTHO05D003479 3.0e-28 129.0 107 68.2
CAN.G137.27 Capsicum annuum HOM05D000185 ORTHO05D000105 3.9e-28 128.6 106 67.9
Cfa012530 Carpinus fangiana HOM05D002988 ORTHO05D003479 5.0e-28 128.3 106 70.8
Cfa012531 Carpinus fangiana HOM05D002988 ORTHO05D003479 6.6e-28 127.9 105 71.4
MELO3C003444.2 Cucumis melo HOM05D002988 ORTHO05D003479 6.6e-28 127.9 102 72.5
Lj8C320T14 Lonicera japonica HOM05D002988 ORTHO05D003479 1.1e-27 127.1 107 66.4
THA.LOC104812762 Tarenaya hassleriana HOM05D002988 ORTHO05D003479 1.1e-27 127.1 108 67.6
FAN18G1509 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.9e-27 126.3 105 70.5
CANSAT21G0553 Cannabis sativa HOM05D002988 ORTHO05D003479 2.5e-27 125.9 101 73.3
MBI05_g28380_MAGBIO Magnolia biondii HOM05D002988 ORTHO05D003479 2.5e-27 125.9 107 67.3
TWI60G0749 Tripterygium wilfordii HOM05D002988 ORTHO05D003479 2.5e-27 125.9 105 71.4
CiPaw.11G099100 Carya illinoinensis HOM05D002988 ORTHO05D003479 3.3e-27 125.6 105 69.5
TPR.G19450 Trifolium pratense HOM05D002988 ORTHO05D003479 3.3e-27 125.6 105 66.7
HPP92_019444 Vanilla planifolia HOM05D002988 ORTHO05D003479 4.3e-27 125.2 107 64.5
ATR0559G075 Amborella trichopoda HOM05D002988 ORTHO05D003479 5.6e-27 124.8 107 65.4
Lalb_Chr09g0325421 Lupinus albus HOM05D002988 ORTHO05D003479 5.6e-27 124.8 105 67.6
Sed0019870 Sechium edule HOM05D002988 ORTHO05D003479 7.3e-27 124.4 105 68.6
Ca_25164_v3 Cicer arietinum L. HOM05D002988 ORTHO05D003479 9.5e-27 124.0 105 65.7
THA.LOC104798497 Tarenaya hassleriana HOM05D002988 ORTHO05D003479 1.2e-26 123.6 106 67.0
ClCG09G011590 Citrullus lanatus HOM05D002988 ORTHO05D003479 2.1e-26 122.9 98 73.5
Nn2g13373 Nelumbo nucifera HOM05D002988 ORTHO05D003479 2.1e-26 122.9 107 68.2
Glyma.09G209100 Glycine max HOM05D002988 ORTHO05D003479 2.8e-26 122.5 105 65.7
AUR62015204 Chenopodium quinoa HOM05D002988 ORTHO05D003479 6.2e-26 121.3 105 67.6
Glyma.01G012500 Glycine max HOM05D002988 ORTHO05D003479 6.2e-26 121.3 105 64.8
PSO063G5812 Papaver somniferum HOM05D002988 ORTHO05D003479 6.2e-26 121.3 107 65.4
Sabra01G0105100 Salix brachista HOM05D002988 ORTHO05D003479 6.2e-26 121.3 103 65.0
VMungo1215G2616 Vigna mungo HOM05D002988 ORTHO05D003479 8.0e-26 120.9 105 67.6
Aqoxy2G02232 Aquilegia oxysepala HOM05D002988 ORTHO05D003479 1.1e-25 120.6 101 67.3
Lj2g0027923 Lotus japonicus HOM05D002988 ORTHO05D003479 1.1e-25 120.6 105 64.8
PSO339G6723 Papaver somniferum HOM05D002988 ORTHO05D003479 1.1e-25 120.6 107 65.4
arahy.Tifrunner.gnm1.ann1.79TK8E Arachis hypogaea HOM05D002988 ORTHO05D003479 1.4e-25 120.2 105 67.6
arahy.Tifrunner.gnm1.ann1.VSYF54 Arachis hypogaea HOM05D002988 ORTHO05D003479 1.4e-25 120.2 105 67.6
Lj2g0001165 Lotus japonicus HOM05D002988 ORTHO05D003479 1.4e-25 120.2 105 64.8
MD16G1270500 Malus domestica HOM05D002988 ORTHO05D003479 1.4e-25 120.2 107 66.4
Zm00001eb335850 Zea mays HOM05D002988 ORTHO05D003479 1.4e-25 120.2 106 66.0
Manes.15G170300 Manihot esculenta HOM05D002988 ORTHO05D003479 1.8e-25 119.8 104 64.4
arahy.Tifrunner.gnm1.ann1.4RS22V Arachis hypogaea HOM05D002988 ORTHO05D003479 2.3e-25 119.4 111 62.2
Psat2g139520 Pisum sativum HOM05D002988 ORTHO05D003479 2.3e-25 119.4 105 64.8
Phvul.002G135200 Phaseolus vulgaris HOM05D002988 ORTHO05D003479 3.1e-25 119.0 105 66.7
Phvul.009G172500 Phaseolus vulgaris HOM05D002988 ORTHO05D003479 3.1e-25 119.0 99 70.7
Sp1g27800 Schrenkiella parvula HOM05D002988 ORTHO05D003479 3.1e-25 119.0 111 62.2
Ah.01g012950 Amaranthus hybridus HOM05D002988 ORTHO05D003479 5.2e-25 118.2 105 64.8
CiPaw.12G069000 Carya illinoinensis HOM05D002988 ORTHO05D003479 5.2e-25 118.2 105 66.7
Medtr5g028030 Medicago truncatula HOM05D002988 ORTHO05D003479 5.2e-25 118.2 105 63.8
BcaC05g27239 Brassica carinata HOM05D002988 ORTHO05D003479 6.8e-25 117.9 111 62.2
A09p34060 Brassica napus HOM05D002988 ORTHO05D003479 6.8e-25 117.9 111 62.2
C05p31540 Brassica napus HOM05D002988 ORTHO05D003479 6.8e-25 117.9 111 62.2
BolC5t31878H Brassica oleracea HOM05D002988 ORTHO05D003479 6.8e-25 117.9 111 62.2
BraA09t38952Z Brassica rapa HOM05D002988 ORTHO05D003479 6.8e-25 117.9 111 62.2
Thhalv10007423m.g Eutrema salsugineum HOM05D002988 ORTHO05D003479 6.8e-25 117.9 109 63.3
MD06G1038400 Malus domestica HOM05D002988 ORTHO05D003479 6.8e-25 117.9 107 65.4
Potri.003G097700 Populus trichocarpa HOM05D002988 ORTHO05D003479 6.8e-25 117.9 104 65.4
Eucgr.L02550 Eucalyptus grandis HOM05D002988 ORTHO05D003479 8.9e-25 117.5 107 69.2
CSS0020264 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.5e-24 116.7 109 64.2
Os01g0147200 Oryza sativa ssp. japonica HOM05D002988 ORTHO05D003479 1.5e-24 116.7 106 63.2
Gohir.D03G176600 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.0e-24 116.3 115 61.7
Gorai.003G185800 Gossypium raimondii HOM05D002988 ORTHO05D003479 2.0e-24 116.3 115 61.7
Duzib205G0674 Durio zibethinus HOM05D002988 ORTHO05D003479 2.6e-24 115.9 113 61.9
Potri.001G135900 Populus trichocarpa HOM05D002988 ORTHO05D003479 9.8e-24 114.0 104 63.5
BcaC05g27241 Brassica carinata HOM05D002988 ORTHO05D003479 1.3e-23 113.6 110 58.2
Gohir.D12G208000 Gossypium hirsutum HOM05D002988 ORTHO05D003479 1.3e-23 113.6 113 60.2
Gorai.008G223500 Gossypium raimondii HOM05D002988 ORTHO05D003479 1.3e-23 113.6 113 60.2
AL1G46210 Arabidopsis lyrata HOM05D002988 ORTHO05D003479 2.2e-23 112.8 107 64.5
Gohir.A12G205600 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.9e-23 112.5 113 60.2
AT1G32130 Arabidopsis thaliana HOM05D002988 ORTHO05D003479 6.4e-23 111.3 107 63.6
Carub.0001s3045 Capsella rubella HOM05D002988 ORTHO05D003479 6.4e-23 111.3 107 62.6
CARHR031490 Cardamine hirsuta HOM05D002988 ORTHO05D003479 6.4e-23 111.3 109 62.4
Aa31LG2G13860 Aethionema arabicum HOM05D002988 ORTHO05D003479 1.9e-22 109.8 109 61.5
CDE08G0151 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 1.2e-21 107.1 93 64.5
Gohir.A03G000029 Gossypium hirsutum HOM05D002988 ORTHO05D003479 2.1e-21 106.3 109 59.6
Aa31LG9G15550 Aethionema arabicum HOM05D002988 ORTHO05D003479 3.5e-21 105.5 109 59.6
BcaB07g32875 Brassica carinata HOM05D002988 ORTHO05D003479 3.5e-21 105.5 98 63.3
CSS0029527 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 3.5e-21 105.5 85 71.8
PGR042G1591 Punica granatum HOM05D002988 ORTHO05D003479 7.8e-21 104.4 106 59.4
Thecc.03G311200 Theobroma cacao HOM05D002988 ORTHO05D003479 7.8e-21 104.4 116 58.6
BcaB07g32878 Brassica carinata HOM05D002988 ORTHO05D003479 1.0e-20 104.0 100 59.0
CSS0026853 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 1.3e-20 103.6 82 72.0
Eucgr.E00221 Eucalyptus grandis HOM05D002988 ORTHO05D003479 1.3e-20 103.6 105 61.0
Lj8C321T9 Lonicera japonica HOM05D002988 ORTHO05D003479 3.0e-20 102.4 87 66.7
AUR62017667 Chenopodium quinoa HOM05D002988 ORTHO05D003479 5.1e-20 101.7 94 62.8
SalBow6G4477 Salvia bowleyana HOM05D002988 ORTHO05D003479 5.1e-20 101.7 66 80.3
DCAR_008208 Daucus carota HOM05D002988 ORTHO05D003479 1.1e-19 100.5 145 47.6
COL.COLO4_16927 Corchorus olitorius HOM05D002988 ORTHO05D003479 4.3e-19 98.6 112 57.1
Actinidia01328 Actinidia chinensis HOM05D002988 ORTHO05D003479 5.6e-19 98.2 117 56.4
SalBow8G3593 Salvia bowleyana HOM05D002988 ORTHO05D003479 5.6e-19 98.2 102 58.8
SGA_v2.0_scaffold89G27433 Striga asiatica HOM05D002988 ORTHO05D003479 7.3e-19 97.8 81 75.3
TAR636G2155 Trochodendron aralioides HOM05D002988 ORTHO05D003479 1.2e-18 97.1 100 56.0
CDE02G4409 Ceratophyllum demersum HOM05D002988 ORTHO05D003479 5.2e-17 91.7 83 62.7
Atru.chr6.1538 Acer truncatum HOM05D002988 ORTHO05D003479 2.0e-16 89.7 118 54.2
SEGI_01029 Sequoiadendron giganteum HOM05D002988 ORTHO05D003479 1.7e-15 86.7 96 55.2
Mapoly0024s0008 Marchantia polymorpha HOM05D002988 ORTHO05D003479 6.4e-15 84.7 94 52.1
Migut.A00607 Erythranthe guttata HOM05D002988 ORTHO05D003479 1.1e-14 84.0 85 54.1
SMO304G0131 Selaginella moellendorffii HOM05D002988 ORTHO05D003479 5.4e-14 81.6 98 52.0
Cpa.g.sc16.1 Carica papaya HOM05D002988 ORTHO05D003479 7.1e-14 81.3 116 48.3
Pp3c7_24670 Physcomitrium patens HOM05D002988 ORTHO05D003479 1.6e-13 80.1 98 50.0
Pp3c7_24683 Physcomitrium patens HOM05D002988 ORTHO05D003479 1.6e-13 80.1 98 50.0
EL10Ac9g22922 Beta vulgaris HOM05D002988 ORTHO05D003479 2.1e-13 79.7 99 50.5
SEGI_12451 Sequoiadendron giganteum HOM05D002988 ORTHO05D003479 2.7e-13 79.3 97 51.5
Ciclev10000803m.g Citrus clementina HOM05D002988 ORTHO05D003479 3.5e-13 79.0 117 47.9
HanXRQChr17g0537631 Helianthus annuus HOM05D002988 ORTHO05D003479 3.5e-13 79.0 84 58.3
HanXRQChr17g0537641 Helianthus annuus HOM05D002988 ORTHO05D003479 3.5e-13 79.0 84 58.3
CSS0034248 Camellia sinensis var. sinensis HOM05D002988 ORTHO05D003479 7.8e-13 77.8 107 51.4
QL12p001089 Quercus lobata HOM05D002988 ORTHO05D003479 5.1e-12 75.1 72 63.9
SEGI_37231 Sequoiadendron giganteum HOM05D002988 ORTHO05D003479 8.6e-12 74.3 76 56.6
Dinv29011 Davidia involucrata HOM05D002988 ORTHO05D003479 4.3e-11 72.0 57 71.9
arahy.Tifrunner.gnm1.ann1.TE4407 Arachis hypogaea HOM05D002988 ORTHO05D003479 1.2e-10 70.5 80 52.5
arahy.Tifrunner.gnm1.ann1.2HFA03 Arachis hypogaea HOM05D002988 ORTHO05D003479 1.6e-10 70.1 82 52.4
arahy.Tifrunner.gnm1.ann1.JK8E19 Arachis hypogaea HOM05D002988 ORTHO05D003479 2.1e-10 69.7 73 57.5
Aqoxy2G03281 Aquilegia oxysepala HOM05D002988 ORTHO05D003479 3.6e-10 68.9 94 46.8
arahy.Tifrunner.gnm1.ann1.A128ZG Arachis hypogaea HOM05D002988 ORTHO05D003479 6.2e-10 68.2 78 55.1
arahy.Tifrunner.gnm1.ann1.JV6Y4C Arachis hypogaea HOM05D002988 ORTHO05D003479 1.1e-09 67.4 82 50.0
FvH4_7g30270 Fragaria vesca HOM05D002988 ORTHO05D003479 1.1e-09 67.4 95 50.5
FAN06G0099 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.1e-09 67.4 95 50.5
FAN06G4167 Fragaria x ananassa HOM05D002988 ORTHO05D003479 1.1e-09 67.4 95 50.5
Thecc.07G012600 Theobroma cacao HOM05D002988 ORTHO05D003479 3.4e-08 62.4 145 33.1
Duzib170G0540 Durio zibethinus HOM05D002988 ORTHO05D003479 4.4e-08 62.0 91 44.0
Duzib170G0146 Durio zibethinus HOM05D002988 ORTHO05D003479 5.8e-08 61.6 103 40.8
Aqoxy2G03099 Aquilegia oxysepala HOM05D002988 ORTHO05D077724 9.9e-08 60.8 87 47.1
Thecc.10G149100 Theobroma cacao HOM05D002988 ORTHO05D003479 1.7e-07 60.1 97 39.2
Thecc.07G009300 Theobroma cacao HOM05D002988 ORTHO05D003479 2.9e-07 59.3 145 33.1
Thecc.07G012200 Theobroma cacao HOM05D002988 ORTHO05D003479 2.9e-07 59.3 145 33.1
CBR_g38667 Chara braunii HOM05D002988 ORTHO05D003479 3.8e-07 58.9 95 38.9
Thecc.07G009100 Theobroma cacao HOM05D002988 ORTHO05D003479 3.8e-07 58.9 144 32.6
Thecc.07G012500 Theobroma cacao HOM05D002988 ORTHO05D003479 9.2e-06 54.3 143 31.5


User provided reference genes

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