Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 5.5e-71 270.8 129 100.0
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.4e-36 155.2 95 73.7
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 5.7e-36 154.5 82 79.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 5.7e-36 154.5 90 72.2
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.5e-36 154.1 95 72.6
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 9.8e-36 153.7 96 75.0
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.3e-35 153.3 82 78.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.7e-35 152.9 80 78.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.7e-35 152.9 90 72.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.7e-35 152.9 87 77.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.7e-35 151.8 82 78.0
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.8e-35 151.4 83 75.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 4.8e-35 151.4 78 82.1
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 4.8e-35 151.4 102 69.6
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 6.3e-35 151.0 78 79.5
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 6.3e-35 151.0 79 79.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.1e-34 150.2 82 78.0
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.8e-34 149.4 89 71.9
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.4e-34 149.1 78 78.2
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 3.1e-34 148.7 88 72.7
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.1e-34 148.3 80 77.5
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 4.1e-34 148.3 80 77.5
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 4.1e-34 148.3 87 73.6
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 4.1e-34 148.3 87 73.6
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.4e-34 147.9 87 71.3
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 5.4e-34 147.9 92 70.7
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.0e-34 147.5 82 75.6
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 7.0e-34 147.5 82 75.6
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 9.1e-34 147.1 92 70.7
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.6e-33 146.4 82 76.8
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.6e-33 146.4 82 75.6
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.0e-33 146.0 89 73.0
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.0e-33 146.0 98 67.3
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 2.0e-33 146.0 88 71.6
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.0e-33 146.0 95 69.5
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.7e-33 145.6 78 76.9
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 2.7e-33 145.6 80 77.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.7e-33 145.6 82 76.8
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 3.5e-33 145.2 80 76.2
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.5e-33 145.2 87 71.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 5.9e-33 144.4 78 78.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 5.9e-33 144.4 75 78.7
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 5.9e-33 144.4 76 81.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 7.7e-33 144.1 92 70.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 1.0e-32 143.7 80 75.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.0e-32 143.7 78 78.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.0e-32 143.7 89 68.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.3e-32 143.3 80 75.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.3e-32 143.3 95 68.4
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.3e-32 143.3 87 69.0
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.7e-32 142.9 82 72.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 1.7e-32 142.9 87 69.0
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 2.3e-32 142.5 80 75.0
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.3e-32 142.5 76 77.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 2.3e-32 142.5 89 68.5
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 2.9e-32 142.1 82 74.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 2.9e-32 142.1 81 74.1
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.8e-32 141.7 92 69.6
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 5.0e-32 141.4 80 73.8
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 5.0e-32 141.4 88 70.5
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.5e-32 141.0 83 73.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.6e-32 140.6 76 77.6
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.1e-31 140.2 80 72.5
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.1e-31 140.2 85 72.9
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.1e-31 140.2 78 75.6
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.5e-31 139.8 78 75.6
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.5e-31 139.0 76 76.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.5e-31 139.0 75 77.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.5e-31 139.0 85 71.8
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 5.5e-31 137.9 82 70.7
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 7.2e-31 137.5 93 66.7
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 7.2e-31 137.5 80 72.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.2e-30 136.7 76 75.0
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 6.1e-30 134.4 77 71.4
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.0e-29 133.7 89 66.3
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 3.0e-29 132.1 93 63.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 5.7e-28 127.9 76 69.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.3e-27 126.7 146 45.9
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.2e-25 120.2 140 44.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.6e-22 108.6 82 61.0
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.7e-19 99.8 84 54.8
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 9.2e-18 94.0 196 30.1
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.0e-16 90.5 41 92.7
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.6e-14 83.2 42 83.3
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 4.7e-14 81.6 42 81.0
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 3.1e-13 79.0 42 81.0
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.2e-12 77.0 41 80.5
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 7.5e-12 74.3 38 76.3
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 9.8e-12 73.9 54 59.3
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.9e-11 72.4 42 66.7
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.1e-10 68.6 130 34.6
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 4.1e-10 68.6 110 36.4
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.1e-10 68.6 80 42.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 5.4e-10 68.2 79 41.8
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 5.4e-10 68.2 51 56.9
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 7.0e-10 67.8 86 38.4
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 7.0e-10 67.8 86 38.4
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 7.0e-10 67.8 77 44.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 7.0e-10 67.8 35 74.3
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 9.2e-10 67.4 79 41.8
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 9.2e-10 67.4 79 43.0
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 1.2e-09 67.0 82 40.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.6e-09 66.6 81 40.7
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 2.0e-09 66.2 119 34.5
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 2.0e-09 66.2 79 40.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.0e-09 66.2 79 40.5
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 2.7e-09 65.9 79 40.5
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 4.6e-09 65.1 79 39.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 4.6e-09 65.1 79 39.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.6e-09 65.1 86 37.2
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 6.0e-09 64.7 84 39.3
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 7.8e-09 64.3 79 39.2
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.0e-08 63.9 43 62.8
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.3e-08 63.5 79 39.2
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.3e-08 63.5 79 39.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.3e-08 63.5 79 39.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.7e-08 63.2 79 39.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.7e-08 63.2 111 32.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.7e-08 63.2 79 39.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.7e-08 63.2 79 39.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.7e-08 63.2 79 39.2
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.3e-08 62.8 83 36.1
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.3e-08 62.8 128 35.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.3e-08 62.8 79 38.0
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 2.3e-08 62.8 79 36.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 3.0e-08 62.4 79 38.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 3.0e-08 62.4 127 33.9
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 3.9e-08 62.0 79 38.0
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 3.9e-08 62.0 79 39.2
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.9e-08 62.0 84 33.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 5.0e-08 61.6 83 37.3
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 5.0e-08 61.6 83 36.1
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 5.0e-08 61.6 120 31.7
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 6.6e-08 61.2 79 38.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 6.6e-08 61.2 79 38.0
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 6.6e-08 61.2 83 37.3
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 8.6e-08 60.8 83 36.1
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.1e-07 60.5 79 36.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.1e-07 60.5 79 38.0
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.1e-07 60.5 79 38.0
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.1e-07 60.5 111 32.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 1.1e-07 60.5 91 35.2
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.1e-07 60.5 79 38.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.5e-07 60.1 98 33.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.5e-07 60.1 79 36.7
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.9e-07 59.7 90 34.4
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.9e-07 59.7 114 30.7
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.9e-07 59.7 79 36.7
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 1.9e-07 59.7 79 36.7
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 1.9e-07 59.7 79 36.7
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.9e-07 59.7 132 31.1
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 2.5e-07 59.3 117 30.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.5e-07 59.3 88 37.5
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 3.3e-07 58.9 79 36.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 3.3e-07 58.9 79 36.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 4.3e-07 58.5 97 34.0
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.3e-07 58.5 97 34.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.3e-07 58.5 97 34.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.3e-07 58.5 97 34.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 4.3e-07 58.5 126 31.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.6e-07 58.2 32 78.1
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 5.6e-07 58.2 79 36.7
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 7.3e-07 57.8 113 31.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 9.5e-07 57.4 91 34.1
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 9.5e-07 57.4 79 36.7
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 1.2e-06 57.0 147 29.9
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.6e-06 56.6 129 31.8
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.6e-06 56.6 127 28.3
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 2.8e-06 55.8 79 31.6
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 3.6e-06 55.5 79 34.2
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 6.2e-06 54.7 84 35.7


User provided reference genes

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