Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 5.5e-287 990.3 525 100.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 3.5e-209 731.9 510 75.3
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 8.4e-203 710.7 511 73.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.3e-200 702.6 485 75.7
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.1e-199 700.3 502 73.9
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.5e-199 699.1 488 75.0
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 5.7e-199 698.0 511 74.8
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.3e-198 696.8 509 73.9
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.6e-198 696.4 501 74.3
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.8e-198 695.7 490 75.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.3e-198 694.5 501 73.5
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 1.8e-197 693.0 501 73.5
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 6.9e-197 691.0 485 75.1
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-196 690.3 503 74.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.0e-196 689.5 488 74.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 7.6e-196 687.6 488 74.8
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.0e-195 687.2 485 74.8
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.7e-193 679.1 502 72.1
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.9e-192 675.2 503 71.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.1e-192 674.9 503 71.6
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.3e-191 672.2 503 71.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.6e-190 669.8 505 71.5
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.2e-190 669.5 503 71.0
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.8e-190 668.3 504 71.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.1e-189 667.2 500 71.4
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 1.8e-189 666.4 489 71.6
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.4e-189 666.0 500 69.6
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 5.3e-189 664.8 506 70.4
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 9.0e-189 664.1 503 70.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 2.0e-188 662.9 511 70.1
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 3.4e-188 662.1 487 72.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 7.7e-188 661.0 512 69.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.7e-188 661.0 501 69.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.7e-188 661.0 503 70.2
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.3e-187 660.2 501 71.5
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.9e-187 659.1 511 69.5
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.8e-187 658.7 505 70.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 8.5e-187 657.5 505 70.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.1e-186 657.1 513 68.4
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.1e-186 657.1 501 68.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.4e-186 656.8 501 69.7
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.9e-186 656.4 501 69.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.2e-186 655.2 510 69.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 4.2e-186 655.2 514 70.0
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.5e-186 654.8 488 70.9
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.5e-186 654.8 506 69.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 7.2e-186 654.4 501 69.9
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.2e-186 654.4 506 69.6
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.4e-186 654.1 506 69.2
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-185 653.3 510 69.0
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.1e-185 652.9 501 69.9
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.7e-185 652.5 516 68.6
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 3.6e-185 652.1 499 70.5
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 3.6e-185 652.1 478 72.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.6e-185 651.7 516 68.6
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 7.9e-185 651.0 510 69.0
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 1.0e-184 650.6 505 69.9
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 1.4e-184 650.2 505 70.7
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 2.3e-184 649.4 503 70.0
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 5.1e-184 648.3 503 69.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.1e-184 648.3 508 69.7
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 5.1e-184 648.3 503 69.6
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 8.8e-184 647.5 425 78.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.8e-184 647.5 484 71.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.1e-183 647.1 502 68.5
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.1e-183 647.1 506 69.4
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.5e-183 646.0 514 68.3
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.5e-183 646.0 502 69.7
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.5e-183 646.0 500 68.6
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.4e-183 644.4 501 70.7
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 9.7e-183 644.0 502 69.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 9.7e-183 644.0 512 68.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 1.7e-182 643.3 505 70.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.7e-182 642.1 477 71.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-181 640.6 477 71.3
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.1e-181 640.6 476 71.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-181 640.6 502 69.1
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.4e-181 640.2 505 69.5
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.4e-181 640.2 501 69.1
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.8e-181 639.8 502 68.9
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.8e-181 639.8 478 71.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.8e-181 639.8 502 68.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-181 639.4 478 71.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 3.1e-181 639.0 478 71.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 3.1e-181 639.0 512 68.0
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.1e-181 639.0 501 68.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 4.1e-181 638.6 505 67.7
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.3e-181 638.3 501 68.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 5.3e-181 638.3 501 68.7
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 9.1e-181 637.5 476 71.0
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.5e-180 636.7 501 68.5
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.5e-180 636.7 512 69.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.0e-180 636.3 425 77.2
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 4.5e-180 635.2 512 67.8
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 5.9e-180 634.8 506 67.6
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 5.9e-180 634.8 478 70.5
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-179 634.0 478 71.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-179 633.6 506 67.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 3.8e-179 632.1 476 70.8
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 4.2e-178 628.6 506 67.0
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.5e-178 628.2 476 70.0
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.2e-177 627.1 500 67.0
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 2.7e-177 625.9 442 73.8
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.1e-177 624.8 501 65.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.0e-176 624.0 540 63.1
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.0e-175 619.8 466 70.4
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 5.7e-175 618.2 500 64.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 9.7e-175 617.5 513 65.5
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.1e-173 612.5 474 66.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.1e-173 612.5 465 68.6
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.6e-172 610.1 608 57.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.1e-170 604.0 607 58.2
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.7e-169 599.4 486 67.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.1e-165 587.4 503 64.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.5e-164 582.4 452 67.9
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.0e-163 580.9 496 63.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.0e-159 566.6 507 62.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.4e-159 565.8 503 60.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.4e-157 559.7 510 62.5
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.4e-152 543.9 437 66.8
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.5e-148 528.9 401 70.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-139 500.7 375 72.5
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.3e-138 495.7 394 65.7
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 7.3e-138 495.0 346 76.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.2e-135 487.6 489 55.6
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.1e-133 481.1 448 61.6
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 1.2e-129 467.6 324 75.9
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.6e-127 459.9 421 63.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.6e-116 424.1 442 53.8
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 3.0e-107 393.3 252 79.4
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.5e-106 390.2 514 50.6
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.4e-102 375.2 286 68.5
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.1e-96 358.2 447 48.1
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.4e-93 347.1 263 68.4
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.3e-91 341.3 493 43.6
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 3.2e-85 320.1 224 72.3
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-84 318.2 314 57.6
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.7e-75 285.8 204 75.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.5e-63 248.1 251 52.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.0e-63 247.7 184 71.7
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 7.4e-58 229.2 329 39.2
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.9e-46 190.7 259 44.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.3e-43 181.0 112 80.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 7.2e-37 159.5 131 67.9
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 4.1e-32 143.7 124 60.5
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 8.0e-28 129.4 133 55.6
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 9.8e-18 95.9 102 54.9
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.9e-17 94.4 98 54.1
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-16 91.3 50 84.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 5.4e-16 90.1 51 86.3
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 5.4e-16 90.1 51 86.3
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.5e-13 82.0 85 54.1
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.1e-12 78.2 178 37.1
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.0e-11 73.9 61 68.9
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.3e-09 68.9 59 61.0
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.4e-08 65.5 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.4e-08 65.5 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.9e-08 65.1 57 54.4
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 6.0e-07 60.1 68 51.5
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 6.0e-07 60.1 68 51.5
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.0e-06 59.3 249 28.5
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.9e-06 57.4 68 51.5


User provided reference genes

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