Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 0.0e+00 1531.2 766 100.0
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 3.8e-297 1024.6 876 62.2
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 1.4e-294 1016.1 912 60.9
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 3.0e-289 998.4 879 61.7
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.9e-283 979.2 866 61.2
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 5.6e-280 967.6 880 60.1
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 6.4e-276 954.1 880 58.6
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 1.6e-274 949.5 878 58.7
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 6.0e-274 947.6 879 58.4
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 1.3e-273 946.4 879 58.2
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 4.3e-272 941.4 880 58.9
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 3.6e-271 938.3 909 56.5
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 4.9e-268 927.9 875 57.5
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 6.4e-268 927.5 909 56.1
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.2e-266 923.3 879 57.1
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.6e-266 922.9 871 58.3
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 6.0e-266 921.0 896 56.7
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 1.0e-265 920.2 880 56.9
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 3.9e-265 918.3 881 57.2
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 5.1e-265 917.9 879 56.8
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.5e-264 916.4 881 57.1
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.2e-263 913.3 867 57.8
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 1.2e-263 913.3 881 57.3
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 2.1e-263 912.5 881 56.5
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.1e-263 912.5 883 57.0
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 6.2e-263 911.0 877 56.8
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.4e-262 909.8 881 57.0
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 5.2e-262 907.9 875 56.5
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 6.9e-262 907.5 868 57.7
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 2.6e-261 905.6 887 56.5
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.1e-259 900.2 876 57.2
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.4e-259 897.9 843 58.0
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 7.1e-259 897.5 873 57.3
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 2.1e-258 896.0 880 56.7
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.5e-256 889.8 867 57.1
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 3.3e-256 888.6 884 55.4
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.6e-255 885.2 861 57.4
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 5.3e-254 881.3 861 56.7
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 1.2e-253 880.2 864 55.7
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 2.0e-253 879.4 877 56.0
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 5.8e-253 877.9 873 55.6
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 9.9e-253 877.1 880 55.6
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 6.4e-252 874.4 873 55.8
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 5.4e-251 871.3 856 56.9
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 5.4e-251 871.3 886 54.9
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 7.1e-251 870.9 861 56.2
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 9.3e-251 870.5 869 54.9
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 9.3e-251 870.5 891 54.3
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 9.3e-251 870.5 876 55.8
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.6e-250 869.8 879 54.8
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.6e-250 869.8 856 56.9
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 3.5e-250 868.6 880 54.7
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 3.5e-250 868.6 873 55.2
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 4.6e-250 868.2 873 55.0
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 3.0e-249 865.5 907 53.9
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 1.1e-248 863.6 880 54.5
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 1.9e-248 862.8 769 61.2
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 5.6e-248 861.3 875 54.5
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 7.4e-248 860.9 867 54.6
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 9.6e-248 860.5 880 54.1
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.6e-247 859.8 874 55.1
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 3.7e-247 858.6 879 54.4
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.1e-246 857.1 875 54.9
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 2.4e-246 855.9 872 54.6
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 4.0e-246 855.1 864 55.9
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 1.7e-244 849.7 874 55.6
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 2.2e-244 849.4 876 54.2
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 2.4e-243 845.9 869 53.7
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 4.2e-243 845.1 864 54.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 5.5e-243 844.7 865 54.6
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 9.3e-243 844.0 868 53.6
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 2.7e-242 842.4 882 54.2
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 3.0e-241 839.0 907 54.0
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.1e-240 837.0 936 51.8
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 3.3e-240 835.5 882 53.6
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 5.6e-240 834.7 863 53.7
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 9.6e-240 833.9 868 52.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 8.2e-239 830.9 867 54.0
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 9.0e-238 827.4 859 53.1
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 9.0e-238 827.4 690 63.0
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 4.5e-237 825.1 772 58.4
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.0e-236 823.9 923 50.7
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 1.0e-236 823.9 889 52.2
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 2.2e-236 822.8 859 53.1
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.9e-235 819.7 622 68.6
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 6.0e-234 814.7 859 52.6
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.8e-233 813.1 837 53.9
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 3.9e-233 812.0 857 53.9
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 5.7e-232 808.1 857 53.3
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 1.3e-231 807.0 653 64.5
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 1.2e-226 790.4 881 51.3
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.7e-226 789.3 861 52.4
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 3.6e-226 788.9 691 60.9
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 7.9e-226 787.7 795 55.7
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 3.0e-225 785.8 718 59.7
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.3e-223 780.4 860 52.7
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 5.9e-221 771.5 879 50.3
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 2.9e-220 769.2 849 51.4
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 9.4e-219 764.2 851 51.6
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 1.2e-218 763.8 856 51.3
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 2.7e-218 762.7 844 51.4
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 3.1e-214 749.2 894 48.2
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.9e-212 742.7 882 49.1
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 8.5e-212 741.1 1119 42.4
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 5.7e-192 675.2 871 47.8
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 1.9e-187 660.2 877 45.7
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 9.8e-184 647.9 761 49.1
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 2.2e-175 620.2 480 66.0
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 1.3e-164 584.3 650 50.8
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 6.6e-164 582.0 658 51.5
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 8.1e-162 575.1 676 48.8
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 3.1e-161 573.2 671 49.3
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 4.0e-161 572.8 684 48.0
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 8.4e-151 538.5 526 57.8
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.1e-145 521.5 835 42.6
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 8.1e-138 495.4 581 48.5
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.4e-137 494.6 406 64.8
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 3.2e-118 430.3 770 38.3
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 3.1e-113 413.7 370 61.1
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 2.8e-106 390.6 630 39.5
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 3.2e-102 377.1 282 67.0
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 2.2e-98 364.4 650 35.4
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 5.3e-81 306.6 186 80.6
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 2.8e-74 284.3 256 58.2
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 8.3e-58 229.6 187 64.2
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 5.0e-55 220.3 806 23.8
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 2.0e-51 208.4 171 61.4
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 1.3e-50 205.7 173 59.0
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.8e-45 188.0 433 35.1
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 2.5e-38 164.9 183 47.0
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 2.5e-38 164.9 138 60.1
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 6.8e-36 156.8 105 73.3
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 2.4e-33 148.3 313 38.0
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 2.1e-32 145.2 499 25.1
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 8.7e-31 139.8 304 32.9
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 1.6e-24 119.0 119 55.5
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 3.2e-17 94.7 59 74.6
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 6.7e-15 87.0 77 58.4
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 7.4e-14 83.6 158 38.0
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 3.4e-11 74.7 128 37.5
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 6.5e-10 70.5 204 22.1
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-09 69.3 62 59.7
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 2.5e-09 68.6 107 42.1
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 3.2e-09 68.2 139 33.1
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 5.5e-09 67.4 71 53.5
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 9.3e-09 66.6 116 37.1
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 1.8e-07 62.4 121 31.4
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 2.3e-07 62.0 112 39.3
Psat2g120640 Pisum sativum HOM05D000319 ORTHO05D002646 1.1e-06 59.7 214 22.9
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 2.5e-06 58.5 34 76.5
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 3.3e-06 58.2 36 69.4
TAR636G0132 Trochodendron aralioides HOM05D000319 ORTHO05D000903 3.3e-06 58.2 220 21.4
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 4.3e-06 57.8 100 34.0
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 4.3e-06 57.8 69 43.5
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 7.4e-06 57.0 75 40.0


User provided reference genes

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