Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 7.8e-135 483.8 245 100.0
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 8.7e-102 374.0 211 90.0
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.7e-87 325.9 213 80.8
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 4.6e-87 325.1 214 79.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 7.9e-87 324.3 208 78.4
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.0e-86 323.9 208 78.4
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.0e-86 322.4 208 79.3
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 3.0e-86 322.4 232 72.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 6.7e-86 321.2 210 80.0
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 6.7e-86 321.2 211 79.6
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.5e-85 320.1 216 75.9
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.3e-85 318.9 211 78.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.4e-85 318.5 208 78.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 7.4e-85 317.8 208 78.4
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 7.4e-85 317.8 211 75.8
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 7.4e-85 317.8 206 76.2
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.7e-84 316.6 211 76.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.8e-84 315.8 209 79.4
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 3.7e-84 315.5 206 77.7
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.7e-84 315.5 213 77.5
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.7e-84 315.5 213 76.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.3e-84 314.7 243 69.1
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.2e-84 314.3 209 76.6
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.1e-83 313.9 210 74.8
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.4e-83 313.5 209 78.5
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.8e-83 313.2 213 75.1
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.4e-83 312.8 214 76.6
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.1e-83 312.4 209 77.5
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 4.1e-83 312.0 210 77.6
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 4.1e-83 312.0 210 75.7
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 4.1e-83 312.0 209 78.5
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.3e-83 311.6 210 75.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 6.9e-83 311.2 213 74.6
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 9.1e-83 310.8 208 78.8
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 9.1e-83 310.8 207 76.8
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.2e-82 310.5 211 76.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.2e-82 310.5 210 75.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-82 309.7 211 76.3
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.0e-82 309.7 209 78.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.0e-81 307.4 207 77.8
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.0e-81 307.4 210 76.2
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.3e-81 307.0 213 73.2
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.3e-81 307.0 211 75.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.3e-81 307.0 212 75.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.7e-81 306.6 210 74.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.7e-81 306.6 212 74.1
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-81 306.6 210 75.2
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-81 306.6 214 74.3
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.2e-81 306.2 214 74.3
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.2e-81 306.2 213 74.6
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.9e-81 305.8 211 75.4
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.9e-81 305.8 211 75.4
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.9e-81 305.8 207 75.4
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.8e-81 305.4 212 74.5
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 5.0e-81 305.1 209 74.6
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 6.5e-81 304.7 212 75.5
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.5e-81 304.3 210 73.3
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.1e-80 303.9 213 74.2
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.1e-80 303.9 213 75.1
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-80 303.1 208 75.5
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.5e-80 302.8 236 67.8
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.2e-80 302.4 213 74.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.2e-80 302.4 211 74.4
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.2e-80 302.4 211 74.4
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.2e-80 302.0 210 74.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.2e-80 302.0 211 73.5
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 5.5e-80 301.6 208 76.4
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.4e-80 300.8 212 74.5
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.2e-79 300.4 227 69.6
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.6e-79 300.1 222 71.6
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.6e-79 300.1 208 75.0
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.6e-79 300.1 210 73.3
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.6e-79 300.1 210 74.8
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 2.1e-79 299.7 214 72.9
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.7e-79 299.3 211 73.9
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.7e-79 299.3 210 73.8
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 6.1e-79 298.1 212 73.1
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 6.1e-79 298.1 220 71.4
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.4e-78 297.0 213 74.2
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.8e-78 296.6 186 79.6
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.3e-78 296.2 212 72.6
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 2.3e-78 296.2 208 73.6
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 2.3e-78 296.2 217 73.3
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.9e-78 295.4 216 73.1
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.9e-78 295.4 210 72.9
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.9e-78 295.4 198 74.7
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 3.9e-78 295.4 211 73.0
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 5.2e-78 295.0 211 73.9
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 5.2e-78 295.0 211 73.9
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 6.7e-78 294.7 210 73.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 6.7e-78 294.7 210 73.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 8.8e-78 294.3 210 72.4
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.1e-77 293.9 211 73.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.5e-77 293.5 209 76.1
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.0e-77 293.1 208 74.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 4.4e-77 292.0 212 73.6
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.4e-77 292.0 207 72.5
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 5.7e-77 291.6 218 70.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.7e-77 291.6 208 72.6
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 7.4e-77 291.2 212 72.6
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 9.7e-77 290.8 209 71.3
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.7e-76 290.0 211 73.0
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.2e-76 289.7 209 73.2
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.8e-76 289.3 210 73.3
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 6.3e-76 288.1 210 72.4
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 8.2e-76 287.7 211 71.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 8.2e-76 287.7 211 72.0
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.1e-75 287.3 207 73.4
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.1e-75 287.3 207 73.9
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.8e-75 286.6 209 71.8
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.4e-75 286.2 223 69.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.4e-75 286.2 203 71.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 3.1e-75 285.8 185 77.8
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 5.3e-75 285.0 214 70.6
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 5.3e-75 285.0 144 93.1
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.0e-75 284.6 214 71.0
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 9.1e-75 284.3 196 74.5
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.2e-74 283.9 208 72.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 5.9e-74 281.6 192 75.0
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.0e-73 280.8 204 70.6
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.9e-72 276.6 202 72.8
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.9e-72 276.6 202 73.3
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.2e-72 274.6 202 72.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.2e-72 274.6 202 72.8
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.6e-71 272.3 189 74.6
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.4e-70 270.4 203 69.5
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.5e-69 266.9 146 85.6
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.0e-69 266.5 208 66.8
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.7e-69 265.0 183 75.4
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 9.7e-69 264.2 168 78.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 1.3e-68 263.8 147 84.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.3e-68 263.8 193 70.5
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.2e-68 263.1 155 81.9
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.8e-68 261.9 211 69.2
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.8e-68 261.9 213 66.2
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.1e-67 260.8 148 83.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.1e-67 260.8 148 83.8
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.1e-67 259.2 207 68.1
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.1e-67 259.2 207 68.1
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.0e-66 256.5 206 67.0
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.2e-63 247.3 189 68.3
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.2e-60 236.5 213 62.4
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.8e-60 236.1 177 70.1
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 4.5e-58 228.8 136 78.7
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.7e-57 226.9 157 70.7
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.9e-56 223.4 150 70.0
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.0e-51 204.9 209 56.5
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.0e-46 189.1 213 55.9
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.7e-41 173.7 207 52.7
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.6e-41 171.8 92 88.0
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.6e-31 140.6 75 90.7
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 4.3e-16 89.4 109 51.4
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.2e-15 87.8 105 50.5
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.4e-14 83.6 105 50.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.8e-12 76.3 96 49.0


User provided reference genes

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