Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 7.6e-133 477.2 254 100.0
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.2e-82 310.5 230 69.6
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 8.0e-82 307.8 232 70.7
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 1.4e-81 307.0 230 70.0
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.6e-80 302.8 230 67.8
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 5.7e-80 301.6 230 69.6
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 9.7e-80 300.8 230 67.8
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 2.2e-79 299.7 230 66.1
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.2e-79 299.7 230 67.4
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.8e-79 299.3 232 66.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 2.8e-79 299.3 230 68.7
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 3.7e-79 298.9 230 67.0
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 6.3e-79 298.1 232 66.4
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 6.3e-79 298.1 232 68.5
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 6.3e-79 298.1 230 66.1
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.4e-78 297.0 230 66.5
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 1.8e-78 296.6 230 66.1
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.8e-78 296.6 230 66.1
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.4e-78 296.2 230 65.2
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 2.4e-78 296.2 230 65.7
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.1e-78 295.8 230 66.1
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 4.1e-78 295.4 230 66.1
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 4.1e-78 295.4 230 66.1
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 4.1e-78 295.4 230 64.8
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 9.1e-78 294.3 230 67.4
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.2e-77 293.9 230 67.0
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 2.0e-77 293.1 230 64.8
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 2.7e-77 292.7 230 65.7
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.9e-77 291.6 230 64.8
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 5.9e-77 291.6 230 66.1
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.0e-76 290.8 230 65.7
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.0e-76 290.8 230 65.7
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.0e-76 290.8 230 64.8
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.3e-76 290.4 230 64.8
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.7e-76 290.0 230 64.3
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 2.2e-76 289.7 230 65.7
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.2e-76 289.7 232 65.5
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.9e-76 289.3 230 65.7
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 3.8e-76 288.9 230 64.8
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.8e-76 288.9 230 64.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 5.0e-76 288.5 230 64.3
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 5.0e-76 288.5 230 64.3
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.5e-76 288.1 235 63.4
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 6.5e-76 288.1 230 66.1
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 8.5e-76 287.7 239 64.4
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.5e-75 287.0 232 65.1
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 1.9e-75 286.6 230 64.3
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.5e-75 286.2 230 63.5
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 3.2e-75 285.8 230 64.8
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 3.2e-75 285.8 235 62.6
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 4.2e-75 285.4 230 64.3
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 4.2e-75 285.4 230 63.5
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 4.2e-75 285.4 230 63.9
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 5.5e-75 285.0 230 65.7
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 7.2e-75 284.6 231 64.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 9.4e-75 284.3 230 63.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.2e-74 283.9 229 66.4
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 1.6e-74 283.5 230 63.9
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.6e-74 283.5 230 61.7
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.1e-74 283.1 230 63.5
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.7e-74 282.7 230 63.5
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 3.6e-74 282.3 231 64.1
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 3.6e-74 282.3 230 64.8
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 3.6e-74 282.3 230 63.0
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 3.6e-74 282.3 220 65.9
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 2.3e-73 279.6 231 64.1
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.3e-73 279.6 230 65.7
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.0e-73 279.3 230 62.6
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 4.0e-73 278.9 230 63.9
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 6.8e-73 278.1 230 62.2
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.2e-72 277.3 254 60.2
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.5e-72 276.9 230 61.7
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.0e-72 276.6 230 62.2
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 2.0e-72 276.6 230 62.6
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 5.7e-72 275.0 230 61.7
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 7.5e-72 274.6 230 62.2
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 7.5e-72 274.6 230 62.2
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 9.8e-72 274.2 252 58.7
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.3e-71 273.9 230 61.7
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.7e-71 273.5 230 61.7
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.2e-71 273.1 230 61.3
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.2e-71 273.1 230 61.7
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.2e-71 273.1 230 62.6
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 2.8e-71 272.7 230 62.6
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 3.7e-71 272.3 230 61.7
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 6.3e-71 271.6 230 60.4
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 6.3e-71 271.6 230 61.3
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 8.3e-71 271.2 230 60.9
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 8.3e-71 271.2 250 60.8
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.1e-70 270.8 230 63.9
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.4e-70 270.4 230 58.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.8e-70 270.0 263 55.1
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 3.1e-70 269.2 230 60.9
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 5.4e-70 268.5 230 58.7
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.5e-69 265.8 230 60.0
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 7.7e-69 264.6 230 58.3
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 7.7e-69 264.6 230 60.0
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 1.7e-68 263.5 201 67.7
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 5.0e-68 261.9 220 61.4
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.1e-67 260.8 236 59.7
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 6.1e-66 255.0 307 50.5
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.0e-65 252.7 230 59.1
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 4.0e-65 252.3 232 55.6
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 1.2e-64 250.8 213 62.0
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.0e-64 250.0 233 55.8
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.8e-62 243.4 318 48.4
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.6e-60 235.0 230 56.1
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 2.5e-59 233.0 360 42.5
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 5.6e-59 231.9 231 57.1
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.1e-58 229.9 230 51.3
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.3e-52 210.7 230 52.2
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 6.6e-52 208.4 181 60.2
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.9e-51 206.8 180 58.9
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 4.3e-51 205.7 166 62.7
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 8.9e-49 198.0 230 50.4
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.4e-48 196.1 140 72.1
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 7.5e-48 194.9 164 61.0
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 2.2e-47 193.4 236 47.9
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.4e-46 190.7 283 43.8
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.9e-46 190.3 164 59.1
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 7.0e-46 188.3 206 52.4
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 5.0e-44 182.2 164 56.7
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.3e-43 179.5 138 64.5
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 8.1e-42 174.9 111 77.5
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 4.0e-41 172.6 117 75.2
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 2.6e-40 169.9 242 45.0
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.3e-39 167.5 243 44.0
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.9e-39 166.4 167 52.1
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 1.9e-38 163.7 176 51.1
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 1.2e-37 161.0 267 42.3
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.5e-35 153.3 291 37.1
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 5.6e-35 152.1 153 54.9
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 3.6e-34 149.4 216 43.5
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 6.2e-34 148.7 138 54.3
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 5.8e-32 142.1 138 55.1
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 3.6e-26 122.9 93 64.5
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.0e-24 117.1 120 48.3
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 1.7e-23 114.0 78 70.5
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.3e-20 104.4 124 50.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 3.0e-20 103.2 71 69.0
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 1.1e-17 94.7 71 64.8
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 2.0e-16 90.5 80 61.2
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 4.9e-15 85.9 133 44.4
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 6.4e-15 85.5 85 54.1
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.1e-14 84.7 56 76.8
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.4e-14 84.3 63 63.5
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 9.3e-14 81.6 102 45.1
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.6e-13 80.9 127 43.3
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 7.9e-13 78.6 67 55.2
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.3e-11 73.2 65 55.4
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.6e-10 70.9 106 44.3
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 8.1e-10 68.6 96 41.7
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 2.4e-09 67.0 61 54.1
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.6e-08 63.5 58 56.9
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 2.2e-07 60.5 41 68.3
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.9e-07 60.1 38 71.1
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 2.4e-06 57.0 56 55.4


User provided reference genes

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