Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 2.4e-262 908.3 466 100.0
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 7.0e-185 651.0 464 72.2
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 1.3e-157 560.5 464 62.7
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.1e-157 559.7 451 64.1
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 2.8e-157 559.3 451 64.1
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.9e-153 546.6 471 61.8
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 6.0e-144 515.0 448 57.8
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 3.1e-124 449.5 450 52.4
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.5e-121 438.7 451 52.3
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 7.2e-121 438.3 469 50.1
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.4e-121 438.0 447 52.8
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 4.3e-118 429.1 432 51.9
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 9.7e-118 427.9 432 51.9
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.9e-111 406.0 461 47.7
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.7e-109 399.4 451 48.6
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.3e-109 398.7 412 50.5
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 6.3e-109 398.7 468 46.2
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 4.5e-107 392.5 452 48.2
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.5e-107 392.5 459 46.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 5.9e-107 392.1 454 45.4
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 7.7e-107 391.7 461 46.6
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.8e-106 389.4 459 46.6
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 8.5e-106 388.3 458 47.4
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.1e-105 387.9 458 46.5
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.9e-105 387.1 463 46.7
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 4.2e-105 386.0 447 47.7
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 5.5e-105 385.6 459 46.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 2.7e-104 383.3 450 46.7
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.0e-103 379.8 465 44.9
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.5e-102 377.5 467 45.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 2.0e-102 377.1 468 45.1
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.6e-102 376.7 471 44.4
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 5.7e-102 375.6 458 45.2
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.2e-101 373.6 467 44.8
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 2.4e-100 370.2 451 46.8
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 3.1e-100 369.8 460 45.0
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.5e-99 365.9 462 43.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 4.5e-99 365.9 449 45.2
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.5e-97 360.1 448 46.0
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.5e-97 360.1 473 43.3
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 3.2e-97 359.8 455 45.5
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.2e-97 359.4 450 44.7
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.6e-96 357.5 450 44.9
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 4.7e-96 355.9 456 44.1
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.7e-96 355.9 451 45.5
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.0e-96 355.1 454 44.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.0e-95 354.8 455 43.5
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.3e-95 353.6 462 44.4
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 4.0e-95 352.8 448 44.9
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 4.0e-95 352.8 464 43.3
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.5e-94 350.9 447 45.2
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.5e-94 350.9 453 43.5
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.5e-94 350.9 447 44.5
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.4e-94 349.7 456 44.7
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.3e-93 347.8 449 43.9
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.3e-93 347.8 428 45.8
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.8e-93 346.7 452 43.6
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-92 344.0 447 43.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.8e-92 344.0 447 43.6
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.4e-92 342.4 447 43.4
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.0e-92 342.0 509 39.7
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.6e-91 340.9 447 43.6
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-91 340.1 427 45.4
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.7e-91 338.6 450 42.7
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 7.7e-91 338.6 450 42.7
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.3e-90 337.8 456 43.2
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.7e-90 337.4 436 44.7
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.2e-90 337.0 458 42.4
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-89 334.7 423 43.0
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-89 334.3 450 42.2
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.5e-89 333.6 453 41.9
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.5e-89 333.6 453 41.9
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 2.5e-89 333.6 447 42.5
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.2e-89 332.0 457 42.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.2e-88 331.3 449 42.1
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 8.0e-88 328.6 443 41.1
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.0e-87 328.2 447 44.1
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 3.0e-87 326.6 445 43.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.0e-87 326.2 443 43.3
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 5.2e-87 325.9 446 42.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 5.2e-87 325.9 455 43.1
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 6.8e-87 325.5 443 42.7
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.8e-87 325.1 440 43.2
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-86 324.7 433 39.0
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 4.4e-86 322.8 450 42.9
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.4e-86 322.8 460 38.9
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 5.7e-86 322.4 450 42.9
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 7.5e-86 322.0 464 39.0
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 1.3e-85 321.2 450 42.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.7e-85 320.9 454 42.3
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 2.2e-85 320.5 441 42.2
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.7e-85 319.7 454 40.3
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 8.3e-85 318.5 471 39.7
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.3e-85 318.5 566 35.9
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.4e-84 317.8 479 39.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 1.8e-84 317.4 475 37.7
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.1e-84 316.2 433 41.6
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 5.9e-83 312.4 448 41.3
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 5.9e-83 312.4 450 41.8
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.1e-81 308.1 454 39.0
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.5e-81 307.8 456 41.7
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.9e-81 307.4 452 39.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.4e-79 301.2 360 44.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 6.8e-79 298.9 469 38.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 5.7e-78 295.8 362 44.2
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.3e-77 294.7 340 46.8
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 2.9e-77 293.5 441 40.6
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 2.9e-77 293.5 429 40.1
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.0e-74 283.5 390 43.1
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 3.0e-74 283.5 447 40.3
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.6e-72 277.7 419 40.8
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 5.2e-71 272.7 456 37.1
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 5.8e-70 269.2 261 52.9
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.2e-68 263.5 250 52.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-68 263.1 279 48.7
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-68 263.1 279 48.7
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.0e-67 260.8 279 47.7
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.2e-64 251.5 257 49.0
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 4.4e-62 243.0 259 49.4
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.4e-60 238.0 336 42.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 2.5e-57 227.3 446 33.0
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 3.5e-51 206.8 451 32.2
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.7e-50 204.5 437 33.9
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 7.3e-49 199.1 406 32.0
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 5.8e-46 189.5 445 31.7
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 7.1e-36 156.0 459 27.9
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-35 155.2 216 37.5
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.6e-35 153.3 318 32.7
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 5.6e-33 146.4 434 29.7
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 6.2e-32 142.9 311 32.5
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.4e-31 141.0 387 28.7
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 4.0e-31 140.2 448 28.8
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 9.9e-30 135.6 263 33.1
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 3.2e-28 130.6 442 28.3
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.1e-27 127.9 256 32.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.0e-26 125.6 140 45.7
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.8e-26 124.8 136 44.9
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.8e-26 124.8 238 35.3
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-25 122.1 238 35.3
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 9.6e-25 119.0 223 37.2
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.5e-22 110.2 237 28.7
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 4.9e-21 106.7 189 34.9
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 2.1e-19 101.3 164 37.2
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 4.6e-19 100.1 234 31.2
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-17 95.1 94 50.0
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.4e-14 84.0 299 27.1
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.8e-13 80.5 126 41.3
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 7.2e-12 76.3 222 32.0
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-11 75.1 173 35.3
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-11 74.7 119 39.5
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 2.1e-11 74.7 119 39.5
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.6e-11 73.6 173 34.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.0e-10 72.4 124 35.5
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-09 68.6 179 34.1
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-09 68.2 68 51.5
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.2e-06 58.9 92 33.7


User provided reference genes

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