Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 1.5e-127 459.5 238 100.0
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.1e-69 267.3 280 57.9
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 2.9e-62 242.7 287 52.3
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 8.0e-60 234.6 280 53.9
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 4.4e-58 228.8 283 51.6
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 3.5e-55 219.2 280 48.9
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 4.3e-53 212.2 246 53.3
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 4.4e-50 202.2 288 48.3
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.7e-49 200.3 288 46.9
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 2.2e-49 199.9 288 47.9
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 1.9e-48 196.8 286 45.5
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 7.0e-48 194.9 283 47.0
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 2.1e-47 193.4 286 46.2
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 7.8e-47 191.4 288 45.8
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 3.0e-46 189.5 286 45.8
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.9e-46 189.1 288 45.5
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 6.6e-46 188.3 282 42.6
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.6e-46 188.3 279 44.1
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.1e-45 187.6 286 44.8
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.1e-45 187.6 286 47.2
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.9e-45 186.8 289 46.7
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 1.9e-45 186.8 288 42.7
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.5e-45 186.4 295 45.4
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 2.5e-45 186.4 285 44.9
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.3e-45 186.0 288 44.1
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 3.3e-45 186.0 286 46.5
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.3e-45 186.0 288 46.2
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 7.3e-45 184.9 289 44.3
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.2e-44 184.1 286 44.1
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 2.1e-44 183.3 284 45.4
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 2.1e-44 183.3 283 44.2
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 2.8e-44 183.0 288 44.4
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 3.6e-44 182.6 296 42.6
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.6e-44 182.6 289 44.3
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 4.7e-44 182.2 284 44.4
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 1.4e-43 180.6 289 43.3
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 1.8e-43 180.3 284 44.4
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 4.0e-43 179.1 284 44.0
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 4.0e-43 179.1 279 44.8
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 4.0e-43 179.1 282 44.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 6.8e-43 178.3 291 44.3
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 6.8e-43 178.3 291 44.3
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.9e-43 177.9 284 44.0
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 8.9e-43 177.9 278 41.7
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 1.5e-42 177.2 282 43.3
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 2.0e-42 176.8 225 49.8
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 2.6e-42 176.4 289 43.3
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 3.4e-42 176.0 291 41.9
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.4e-42 175.6 291 43.0
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 5.8e-42 175.3 290 43.1
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 5.8e-42 175.3 237 47.7
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 7.5e-42 174.9 293 44.7
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 9.9e-42 174.5 286 43.0
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.3e-41 174.1 293 42.7
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.3e-41 174.1 291 44.0
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.7e-41 172.6 282 40.1
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 3.7e-41 172.6 279 43.4
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 4.9e-41 172.2 278 40.3
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 4.9e-41 172.2 280 38.6
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.9e-41 172.2 307 41.4
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 4.9e-41 172.2 286 40.9
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 6.4e-41 171.8 282 39.7
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 6.4e-41 171.8 279 43.4
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 6.4e-41 171.8 284 40.5
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.1e-40 171.0 284 43.0
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.1e-40 171.0 286 43.4
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.4e-40 170.6 289 41.5
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 1.4e-40 170.6 283 42.8
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.9e-40 170.2 281 40.6
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.9e-40 170.2 280 44.6
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 1.9e-40 170.2 286 42.7
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 2.4e-40 169.9 279 40.9
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.4e-40 169.9 291 40.9
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 2.4e-40 169.9 287 39.4
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 2.4e-40 169.9 286 43.0
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 4.1e-40 169.1 282 39.4
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 4.1e-40 169.1 234 49.6
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 5.4e-40 168.7 284 42.6
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 7.1e-40 168.3 239 46.9
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 9.2e-40 167.9 285 43.5
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.2e-39 167.5 276 44.2
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 1.6e-39 167.2 283 40.3
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 2.7e-39 166.4 280 38.2
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 2.7e-39 166.4 283 39.9
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 2.7e-39 166.4 328 38.1
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.0e-38 164.5 285 39.6
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 1.3e-38 164.1 275 40.0
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 1.3e-38 164.1 275 40.0
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 1.3e-38 164.1 275 40.0
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 1.3e-38 164.1 286 41.6
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 2.3e-38 163.3 272 40.1
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 3.0e-38 162.9 279 41.9
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.9e-38 162.5 322 38.2
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 5.1e-38 162.2 284 40.8
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 6.6e-38 161.8 280 41.8
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.1e-37 161.0 272 39.7
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.5e-37 160.6 277 41.5
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 1.9e-37 160.2 280 39.3
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.9e-37 160.2 280 39.3
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 2.5e-37 159.8 286 38.1
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.3e-37 159.5 277 41.5
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 9.5e-37 157.9 290 39.7
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 1.2e-36 157.5 284 41.9
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.8e-36 156.4 241 45.2
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.8e-36 156.4 248 46.4
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.6e-36 156.0 283 39.6
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 6.2e-36 155.2 261 40.2
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.4e-35 154.1 354 35.6
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 1.8e-35 153.7 247 42.5
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 2.4e-35 153.3 276 39.9
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.4e-34 149.1 284 41.5
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 4.4e-34 149.1 283 38.5
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 5.8e-34 148.7 148 56.1
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 7.6e-34 148.3 283 36.7
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.7e-33 147.1 280 40.7
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 3.8e-33 146.0 296 39.2
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.4e-32 143.3 284 39.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.6e-31 140.6 282 36.2
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.7e-31 139.8 233 44.2
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 6.0e-31 138.7 350 34.6
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 1.3e-30 137.5 110 65.5
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 4.7e-28 129.0 272 38.6
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 1.5e-26 124.0 126 53.2
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 1.6e-23 114.0 107 58.9
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 4.6e-23 112.5 471 26.8
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 6.0e-23 112.1 277 34.3
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 5.1e-22 109.0 216 40.7
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.1e-21 107.8 179 41.9
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 1.1e-21 107.8 151 45.7
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 2.5e-21 106.7 138 48.6
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.6e-20 102.8 118 50.8
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 1.4e-16 90.9 175 38.3
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 2.4e-16 90.1 90 54.4
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 2.7e-15 86.7 169 39.1
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 2.3e-14 83.6 179 37.4
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 6.7e-14 82.0 176 35.8
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 8.7e-14 81.6 139 37.4
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.1e-11 74.7 134 38.8
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.4e-11 74.3 154 36.4
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 3.1e-11 73.2 154 39.6
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.3e-11 72.4 146 36.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.2e-10 71.2 153 37.9
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 2.0e-10 70.5 280 28.6
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.3e-09 67.8 145 29.7
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 3.8e-09 66.2 103 41.7
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.1e-08 64.7 144 34.0
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 1.4e-08 64.3 158 33.5
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 4.2e-08 62.8 145 33.1
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.2e-07 61.2 145 31.7
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-06 57.8 145 33.1
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 2.3e-06 57.0 285 26.7
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.0e-06 56.6 57 52.6
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 3.0e-06 56.6 125 36.0
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.1e-06 55.8 66 45.5


User provided reference genes

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