Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 4492.6 2191 100.0
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2237.2 2493 49.0
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 2093.5 2480 46.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1846.2 2570 42.3
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1788.1 2556 41.4
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 1734.5 2522 40.7
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 1734.2 2541 40.6
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 1723.0 2548 40.7
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 1722.6 2521 40.3
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 1717.6 2521 39.9
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1697.9 2507 40.3
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1678.3 2556 40.1
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 1656.7 2582 38.8
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1643.6 2549 38.5
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1636.3 2572 39.2
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1627.5 2572 38.8
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1619.0 2569 38.7
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1618.6 2531 39.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1612.8 2573 38.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1612.0 2639 38.3
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1611.7 2574 38.2
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1610.5 2572 38.9
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1606.3 2570 38.0
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1604.3 2569 38.2
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1602.0 2554 38.6
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1601.3 2579 38.7
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1600.9 2571 38.0
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1593.9 2574 37.8
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1593.6 2574 37.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1586.6 2567 37.9
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 1584.7 2611 38.1
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1583.2 2590 38.7
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 1573.9 2584 38.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1573.1 2582 38.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1555.0 2521 37.8
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 1546.6 2588 37.5
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 1540.8 2556 36.7
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1537.7 2521 37.7
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 1535.8 2416 38.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 1534.6 2558 37.1
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1533.9 2546 36.5
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1533.5 2589 37.4
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 1532.3 2554 36.6
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1531.5 2437 38.9
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 1525.4 2575 37.4
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 1523.5 2600 37.6
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1521.1 2541 37.2
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 1519.2 2545 36.9
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 1510.0 2548 37.3
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 1507.3 2534 37.2
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1505.7 2486 38.1
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 1505.0 2542 37.6
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1493.0 2571 37.3
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1492.2 2481 38.0
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 1485.7 2569 37.0
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 1479.9 2559 36.4
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 1476.5 2522 36.9
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1472.6 2565 36.8
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1471.8 2505 37.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 1467.2 2536 36.6
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 1465.3 2555 36.8
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 1461.0 2524 36.8
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1455.3 2524 36.5
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 1453.0 2525 36.4
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 1446.8 2524 36.5
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1446.0 2587 37.0
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 1442.2 2570 36.5
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1436.0 2570 35.9
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 1435.2 2557 35.7
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1426.4 2328 38.6
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1423.3 2285 38.7
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 1414.1 2549 35.9
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 1411.0 2566 35.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 1408.7 2561 35.6
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1400.2 2474 36.3
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 1394.4 2519 35.9
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 1384.8 2393 35.7
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 1374.4 2375 36.7
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1211.4 2496 33.4
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1166.4 1954 38.1
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1132.9 1871 36.3
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1096.3 2518 31.7
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1083.2 1918 35.5
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.6e-309 1064.7 1336 44.0
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.1e-292 1010.4 1346 42.5
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 2.9e-281 973.4 1963 33.7
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 1.2e-274 951.4 1351 39.8
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 5.5e-264 916.0 1417 39.2
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 7.2e-256 889.0 1419 38.8
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 2.1e-255 887.5 1470 38.0
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 3.6e-255 886.7 1339 38.4
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 2.5e-232 810.8 2708 27.5
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 6.6e-225 786.2 1810 31.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.9e-211 741.5 1333 36.1
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 2.1e-191 674.9 1181 35.5
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.5e-172 609.8 1011 36.2
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 2.6e-165 588.2 1074 37.1
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 6.1e-162 577.0 1081 35.5
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.1e-155 556.2 1032 34.6
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 5.5e-155 553.9 1110 34.2
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 5.5e-147 527.3 1698 26.9
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.2e-144 519.6 1077 33.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.2e-144 519.6 1077 33.0
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 5.4e-134 484.2 1584 27.3
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 5.5e-131 474.2 561 48.3
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-130 473.0 691 38.6
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 6.1e-130 470.7 705 40.6
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 4.9e-127 461.1 471 51.8
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 8.0e-122 443.7 469 51.0
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.2e-121 441.0 469 48.6
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 3.3e-115 421.8 364 58.5
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.6e-98 366.3 288 64.2
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 5.8e-96 357.8 443 43.8
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.6e-96 357.5 750 30.9
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.6e-93 349.7 935 28.0
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 4.3e-91 341.7 351 46.4
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 1.3e-87 330.1 235 68.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.4e-86 326.6 670 34.6
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.3e-86 323.9 412 44.2
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.7e-85 322.4 394 48.0
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 2.6e-72 279.3 185 70.3
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 4.5e-72 278.5 205 66.3
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.3e-68 266.9 230 59.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 4.6e-61 241.9 426 34.0
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.5e-46 193.0 204 51.0
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 5.5e-46 191.8 210 48.6
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 5.7e-43 181.8 307 40.4
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 2.2e-31 143.3 114 62.3
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 8.5e-31 141.4 120 57.5
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 9.4e-30 137.9 136 52.2
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 8.0e-29 134.8 234 34.6
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 3.3e-27 129.4 204 36.8
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 7.5e-27 128.3 90 71.1
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 1.6e-24 120.6 209 31.6
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.3e-23 117.5 165 40.0
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.7e-23 117.1 116 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.2e-23 116.7 266 29.7
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 3.8e-23 115.9 145 43.4
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 3.2e-22 112.8 487 26.3
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.4e-20 107.5 132 43.2
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.4e-19 102.8 113 48.7
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.3e-18 100.9 207 32.4
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 8.3e-18 98.2 113 47.8
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 7.0e-17 95.1 125 44.0
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.0e-15 91.3 99 51.5
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 5.0e-15 89.0 179 29.6
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 5.0e-15 89.0 179 29.6
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 2.1e-13 83.6 171 33.3
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 3.6e-13 82.8 65 58.5
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.3e-12 80.1 124 39.5
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 5.9e-08 65.5 40 65.0
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.0e-07 64.7 56 55.4
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.0e-07 62.4 119 33.6
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 5.6e-06 58.9 78 35.9


User provided reference genes

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