Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.0e-172 609.0 309 100.0
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.3e-91 339.7 275 61.1
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.2e-89 333.2 284 59.9
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.8e-89 332.0 269 59.9
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 6.5e-86 321.6 303 53.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.2e-85 318.9 302 53.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 9.7e-82 307.8 295 51.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 9.7e-82 307.8 298 51.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 8.2e-81 304.7 269 54.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-80 303.1 269 53.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 6.9e-80 301.6 281 53.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.9e-80 301.6 267 53.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.7e-79 298.1 297 50.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 5.0e-78 295.4 305 47.5
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 6.5e-78 295.0 267 55.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 8.5e-78 294.7 305 49.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 8.5e-78 294.7 266 52.6
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.5e-77 293.1 268 51.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.2e-77 292.7 266 52.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 5.5e-77 292.0 302 50.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 9.4e-77 291.2 267 51.7
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 9.4e-77 291.2 267 52.1
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-76 290.8 265 53.2
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.6e-76 290.4 266 51.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 2.7e-76 289.7 291 48.1
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 6.1e-76 288.5 265 49.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 6.1e-76 288.5 267 52.4
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.1e-76 288.5 302 49.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.3e-75 286.6 268 49.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.9e-75 285.8 291 47.4
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.9e-75 285.8 268 51.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 5.1e-75 285.4 303 48.8
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 5.1e-75 285.4 296 48.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 8.8e-75 284.6 269 51.7
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.0e-74 283.5 265 50.6
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.6e-74 283.1 287 47.0
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.6e-74 283.1 302 47.7
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.6e-74 283.1 267 51.7
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.4e-74 282.3 265 52.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 4.4e-74 282.3 267 50.9
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 4.4e-74 282.3 304 49.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 5.7e-74 282.0 277 54.2
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.3e-73 280.8 266 52.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.3e-73 280.8 266 52.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.7e-73 280.4 267 53.6
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.7e-73 280.4 265 52.1
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.2e-73 280.0 296 49.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.8e-73 279.6 307 46.6
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.8e-73 279.6 270 51.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.3e-73 278.5 305 49.2
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 8.2e-73 278.1 302 47.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 1.1e-72 277.7 264 52.3
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.4e-72 277.3 271 49.1
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.4e-72 277.3 263 51.0
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.4e-72 277.3 295 47.5
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.8e-72 276.9 266 46.2
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.4e-72 276.6 285 45.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.1e-72 276.2 270 50.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.1e-72 275.8 266 51.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.1e-72 275.8 266 51.1
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 5.3e-72 275.4 302 49.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 7.0e-72 275.0 291 47.4
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 9.1e-72 274.6 263 50.6
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.6e-71 273.9 284 47.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.6e-71 273.9 293 49.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.6e-71 273.1 303 45.2
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 4.5e-71 272.3 294 46.6
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 7.7e-71 271.6 265 48.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.0e-70 271.2 295 48.1
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.0e-70 271.2 287 48.4
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.2e-70 270.0 302 46.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.9e-70 269.6 309 46.9
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.9e-70 269.6 265 50.6
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 5.0e-70 268.9 270 50.0
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.5e-69 267.3 291 47.4
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 5.5e-69 265.4 308 46.4
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 5.5e-69 265.4 310 47.1
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 7.2e-69 265.0 308 45.5
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 7.2e-69 265.0 299 46.8
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 9.4e-69 264.6 309 46.6
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.6e-68 263.8 304 46.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.1e-68 263.5 287 44.6
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 2.1e-68 263.5 265 46.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.6e-68 262.7 279 48.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 3.6e-68 262.7 271 49.1
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.1e-68 261.9 279 47.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.0e-67 261.2 268 48.9
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.4e-67 260.8 302 45.4
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.8e-67 260.4 272 48.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.8e-67 260.4 265 46.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.3e-67 260.0 268 48.5
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 5.2e-67 258.8 273 47.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.1e-66 257.7 279 47.3
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.6e-66 256.5 306 44.1
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.7e-65 252.7 317 45.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.8e-64 250.4 302 43.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.1e-64 249.6 343 42.3
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 4.1e-64 249.2 269 45.4
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 9.1e-64 248.1 300 45.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.5e-62 241.9 290 44.1
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.5e-61 240.0 294 40.1
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 3.2e-61 239.6 271 43.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.2e-61 239.2 300 40.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 7.2e-61 238.4 274 44.2
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.2e-61 238.4 269 42.8
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.2e-60 237.7 268 44.8
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.6e-60 237.3 264 45.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.6e-60 237.3 277 41.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 6.1e-60 235.3 266 45.9
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.0e-60 235.0 296 39.2
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.2e-59 232.3 272 44.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.4e-58 229.2 306 40.2
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.5e-58 228.4 299 42.5
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 2.2e-57 226.9 296 43.9
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 7.0e-56 221.9 204 56.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 9.1e-56 221.5 287 38.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.5e-55 219.5 266 44.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.7e-55 218.4 202 52.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.7e-55 218.4 202 52.0
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.3e-54 217.6 198 53.5
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.0e-51 208.0 263 42.2
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-51 207.6 232 44.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.4e-51 207.6 201 47.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.8e-51 205.3 251 43.4
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.3e-46 190.3 264 37.1
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.9e-45 187.2 266 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.5e-45 186.8 272 36.8
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 9.5e-45 184.9 263 39.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.0e-44 181.8 275 38.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.8e-43 178.7 302 36.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.5e-42 177.6 292 34.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 3.4e-42 176.4 172 51.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 5.7e-42 175.6 178 47.2
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.7e-38 164.1 169 45.0
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.6e-37 159.1 273 31.5
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.2e-34 151.4 275 32.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.4e-32 142.5 208 39.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-21 107.8 98 55.1
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.5e-21 105.1 202 31.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.8e-18 95.9 118 39.0
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.2e-15 88.2 134 35.1
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.3e-13 79.7 185 30.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 3.6e-12 76.6 93 37.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 8.1e-12 75.5 98 38.8
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 4.4e-10 69.7 185 28.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 5.8e-10 69.3 200 28.5
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.9e-09 67.0 65 50.8
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-08 62.8 65 47.7
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 5.4e-08 62.8 65 47.7


User provided reference genes

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