Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22543 Utricularia gibba HOM05D000049 ORTHO05D011980 1.4e-74 282.7 133 100.0
Oeu042403.1 Olea europaea HOM05D000049 ORTHO05D000027 3.8e-19 98.6 67 70.1
EL10Ac6g15558 Beta vulgaris HOM05D000049 ORTHO05D000027 5.0e-19 98.2 67 70.1
HanXRQChr09g0261491 Helianthus annuus HOM05D000049 ORTHO05D000027 6.6e-19 97.8 67 68.7
Sc03g0002990 Simmondsia chinensis HOM05D000049 ORTHO05D000027 6.6e-19 97.8 67 67.2
TAR381G0235 Trochodendron aralioides HOM05D000049 ORTHO05D000027 8.6e-19 97.4 67 68.7
EL10Ac7g16258 Beta vulgaris HOM05D000049 ORTHO05D000027 1.1e-18 97.1 67 68.7
Cpa.g.sc6.116 Carica papaya HOM05D000049 ORTHO05D000027 1.1e-18 97.1 67 68.7
Gohir.D03G014100 Gossypium hirsutum HOM05D000049 ORTHO05D000027 1.1e-18 97.1 67 68.7
Gorai.003G014400 Gossypium raimondii HOM05D000049 ORTHO05D000027 1.1e-18 97.1 67 68.7
Cc03_g11540 Coffea canephora HOM05D000049 ORTHO05D000027 1.5e-18 96.7 67 68.7
Hund20734 Selenicereus undatus HOM05D000049 ORTHO05D000027 1.5e-18 96.7 67 67.2
Atru.chr3.581 Acer truncatum HOM05D000049 ORTHO05D000027 1.9e-18 96.3 67 67.2
ATR0916G006 Amborella trichopoda HOM05D000049 ORTHO05D000027 1.9e-18 96.3 66 68.2
BolC7t40842H Brassica oleracea HOM05D000049 ORTHO05D000027 1.9e-18 96.3 47 89.4
Gohir.A02G165900 Gossypium hirsutum HOM05D000049 ORTHO05D000027 1.9e-18 96.3 67 68.7
TPR.G24123 Trifolium pratense HOM05D000049 ORTHO05D000027 1.9e-18 96.3 67 70.1
AL3G51670 Arabidopsis lyrata HOM05D000049 ORTHO05D000027 2.5e-18 95.9 47 89.4
arahy.Tifrunner.gnm1.ann1.4F14CM Arachis hypogaea HOM05D000049 ORTHO05D000027 2.5e-18 95.9 47 89.4
arahy.Tifrunner.gnm1.ann1.RR0NEL Arachis hypogaea HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 68.7
AUR62007570 Chenopodium quinoa HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 67.2
Duzib187G0891 Durio zibethinus HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 67.2
Gohir.A11G184201 Gossypium hirsutum HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 67.2
SGA_v2.0_scaffold614G53204 Striga asiatica HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 68.7
Thecc.01G034800 Theobroma cacao HOM05D000049 ORTHO05D000027 2.5e-18 95.9 67 67.2
AUR62004056 Chenopodium quinoa HOM05D000049 ORTHO05D000027 3.3e-18 95.5 67 67.2
COL.COLO4_24893 Corchorus olitorius HOM05D000049 ORTHO05D000027 3.3e-18 95.5 67 68.7
Eucgr.D02615 Eucalyptus grandis HOM05D000049 ORTHO05D000027 3.3e-18 95.5 67 67.2
Glyma.01G176300 Glycine max HOM05D000049 ORTHO05D000027 3.3e-18 95.5 47 89.4
Glyma.11G068500 Glycine max HOM05D000049 ORTHO05D000027 3.3e-18 95.5 47 89.4
Phvul.002G030600 Phaseolus vulgaris HOM05D000049 ORTHO05D000027 3.3e-18 95.5 47 89.4
PGSC0003DMG401020702 Solanum tuberosum HOM05D000049 ORTHO05D011980 3.3e-18 95.5 47 89.4
TAR625G0429 Trochodendron aralioides HOM05D000049 ORTHO05D000027 3.3e-18 95.5 67 68.7
Atru.chr12.876 Acer truncatum HOM05D000049 ORTHO05D000027 4.2e-18 95.1 67 67.2
Lj1g0019429 Lotus japonicus HOM05D000049 ORTHO05D000027 4.2e-18 95.1 47 89.4
SalBow1G0952 Salvia bowleyana HOM05D000049 ORTHO05D000027 4.2e-18 95.1 47 87.2
Aa31LG8G15640 Aethionema arabicum HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 68.7
AT2G18390 Arabidopsis thaliana HOM05D000049 ORTHO05D000027 5.5e-18 94.7 47 87.2
Carub.0003s3254 Capsella rubella HOM05D000049 ORTHO05D000027 5.5e-18 94.7 47 87.2
Ca_22270_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 68.7
Ca_22283_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 68.7
Gohir.D11G190700 Gossypium hirsutum HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 65.7
Gorai.007G203200 Gossypium raimondii HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 65.7
LjContig00448g0006848 Lotus japonicus HOM05D000049 ORTHO05D000027 5.5e-18 94.7 47 87.2
Sabra07G0021900 Salix brachista HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 65.7
Solyc07g014650.3 Solanum lycopersicum HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 67.2
Sopen07g005510 Solanum pennellii HOM05D000049 ORTHO05D000027 5.5e-18 94.7 67 67.2
BcaC01g06894 Brassica carinata HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
BcaC06g36405 Brassica carinata HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
A06p33240 Brassica napus HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
A07p02350 Brassica napus HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
C03p59210 Brassica napus HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
C07p04470 Brassica napus HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
BolC3t18177H Brassica oleracea HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
BraA06t26255Z Brassica rapa HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
BraA07t28026Z Brassica rapa HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
CARHR108990 Cardamine hirsuta HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
Thhalv10022871m.g Eutrema salsugineum HOM05D000049 ORTHO05D000027 7.2e-18 94.4 67 67.2
CAN.G33.7 Capsicum annuum HOM05D000049 ORTHO05D000027 9.5e-18 94.0 67 65.7
Aqoxy5G01620 Aquilegia oxysepala HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 64.2
Ciclev10032495m.g Citrus clementina HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 65.7
Migut.H00987 Erythranthe guttata HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 65.7
Lj3g0012089 Lotus japonicus HOM05D000049 ORTHO05D000027 1.2e-17 93.6 47 87.2
Medtr8g077540 Medicago truncatula HOM05D000049 ORTHO05D000027 1.2e-17 93.6 47 87.2
Nitab4.5_0000053g0130 Nicotiana tabacum HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 67.2
Nitab4.5_0004947g0020 Nicotiana tabacum HOM05D000049 ORTHO05D000027 1.2e-17 93.6 66 66.7
Potri.007G024800 Populus trichocarpa HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 65.7
PGR119G0481 Punica granatum HOM05D000049 ORTHO05D000027 1.2e-17 93.6 67 67.2
CANSAT54G0966 Cannabis sativa HOM05D000049 ORTHO05D000027 1.6e-17 93.2 47 87.2
ClCG01G019580 Citrullus lanatus HOM05D000049 ORTHO05D000027 1.6e-17 93.2 47 85.1
Psat4g092960 Pisum sativum HOM05D000049 ORTHO05D000027 1.6e-17 93.2 47 87.2
BcaB03g16643 Brassica carinata HOM05D000049 ORTHO05D000027 2.1e-17 92.8 67 67.2
CsaV3_6G046260 Cucumis sativus L. HOM05D000049 ORTHO05D000027 2.1e-17 92.8 47 83.0
Sopen09g026030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-17 92.8 51 78.4
CSS0005450 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D000027 2.8e-17 92.4 67 62.7
CiPaw.01G039600 Carya illinoinensis HOM05D000049 ORTHO05D000027 2.8e-17 92.4 47 85.1
DCAR_017292 Daucus carota HOM05D000049 ORTHO05D000027 2.8e-17 92.4 47 85.1
TWI09G0572 Tripterygium wilfordii HOM05D000049 ORTHO05D000027 2.8e-17 92.4 67 64.2
FvH4_5g30040 Fragaria vesca HOM05D000049 ORTHO05D000027 3.6e-17 92.0 67 64.2
QL06p046218 Quercus lobata HOM05D000049 ORTHO05D000027 3.6e-17 92.0 46 82.6
Sp3g31800 Schrenkiella parvula HOM05D000049 ORTHO05D000027 3.6e-17 92.0 67 65.7
SpUn0030_0030 Schrenkiella parvula HOM05D000049 ORTHO05D000027 3.6e-17 92.0 67 65.7
ClCG01G019550 Citrullus lanatus HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 83.0
FvH4_5g39540 Fragaria vesca HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 85.1
FAN04G0739 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 85.1
FAN08G3444 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 85.1
FAN18G4380 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 85.1
PSO017G0329 Papaver somniferum HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 83.0
Peaxi162Scf00889g00110 Petunia axillaris HOM05D000049 ORTHO05D000027 4.7e-17 91.7 67 64.2
Prupe.8G270100 Prunus persica HOM05D000049 ORTHO05D000027 4.7e-17 91.7 47 85.1
GSVIVG01018953001 Vitis vinifera HOM05D000049 ORTHO05D000027 4.7e-17 91.7 67 65.7
Zm00001eb052220 Zea mays HOM05D000049 ORTHO05D000027 4.7e-17 91.7 67 61.2
MELO3C007829.2 Cucumis melo HOM05D000049 ORTHO05D000027 6.1e-17 91.3 47 83.0
FAN13G2744 Fragaria x ananassa HOM05D000049 ORTHO05D000027 6.1e-17 91.3 47 83.0
MD03G1270500 Malus domestica HOM05D000049 ORTHO05D000027 6.1e-17 91.3 47 83.0
Manes.02G099400 Manihot esculenta HOM05D000049 ORTHO05D000027 6.1e-17 91.3 47 83.0
PSO675G6496 Papaver somniferum HOM05D000049 ORTHO05D000027 6.1e-17 91.3 47 80.9
THA.LOC104819787 Tarenaya hassleriana HOM05D000049 ORTHO05D000027 6.1e-17 91.3 67 64.2
CDE07G1378 Ceratophyllum demersum HOM05D000049 ORTHO05D000027 8.0e-17 90.9 67 64.2
RcHm_v2.0_Chr7g0241851 Rosa chinensis HOM05D000049 ORTHO05D000027 8.0e-17 90.9 47 83.0
Lalb_Chr09g0333501 Lupinus albus HOM05D000049 ORTHO05D000027 1.0e-16 90.5 65 66.2
vmacro17827 Vaccinium macrocarpon HOM05D000049 ORTHO05D000027 1.0e-16 90.5 47 83.0
Cfa004414 Carpinus fangiana HOM05D000049 ORTHO05D000027 1.4e-16 90.1 47 83.0
Cfa009642 Carpinus fangiana HOM05D000049 ORTHO05D000027 1.4e-16 90.1 47 83.0
Nn1g04974 Nelumbo nucifera HOM05D000049 ORTHO05D000027 1.4e-16 90.1 47 83.0
Rhsim08G0117800 Rhododendron simsii HOM05D000049 ORTHO05D000027 1.4e-16 90.1 47 83.0
CAN.G700.20 Capsicum annuum HOM05D000049 ORTHO05D000027 1.8e-16 89.7 67 64.2
Haze_25324 Corylus avellana HOM05D000049 ORTHO05D000027 1.8e-16 89.7 46 84.8
FAN18G1560 Fragaria x ananassa HOM05D000049 ORTHO05D000027 4.0e-16 88.6 65 61.5
Os02g0327100 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D000027 5.2e-16 88.2 67 59.7
Mapoly0224s0005 Marchantia polymorpha HOM05D000049 ORTHO05D000027 6.8e-16 87.8 67 62.7
SEGI_00520 Sequoiadendron giganteum HOM05D000049 ORTHO05D000027 6.8e-16 87.8 67 62.7
Lj4A201T51 Lonicera japonica HOM05D000049 ORTHO05D000027 8.9e-16 87.4 47 83.0
EL10Ac5g12252 Beta vulgaris HOM05D000049 ORTHO05D000015 1.5e-15 86.7 60 68.3
Hma1.2p1_0400F.1_g144370 Hydrangea macrophylla HOM05D000049 ORTHO05D000027 3.4e-15 85.5 48 79.2
Lsat_1_v5_gn_4_152040 Lactuca sativa HOM05D000049 ORTHO05D000027 3.4e-15 85.5 62 62.9
HPP92_027717 Vanilla planifolia HOM05D000049 ORTHO05D000027 4.4e-15 85.1 47 74.5
COL.COLO4_35758 Corchorus olitorius HOM05D003614 ORTHO05D004156 5.7e-15 84.7 63 61.9
ECA232G2840 Erigeron canadensis HOM05D004035 ORTHO05D004631 1.3e-14 83.6 60 63.3
vmacro19536 Vaccinium macrocarpon HOM05D000049 ORTHO05D011980 1.7e-14 83.2 46 82.6
RcHm_v2.0_Chr7g0224231 Rosa chinensis HOM05D000049 ORTHO05D000027 2.8e-14 82.4 60 63.3
FAN12G2068 Fragaria x ananassa HOM05D000049 ORTHO05D000027 8.3e-14 80.9 67 61.2
FAN08G3378 Fragaria x ananassa HOM05D000049 ORTHO05D011980 1.4e-13 80.1 37 89.2
FAN12G1829 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.4e-13 80.1 47 78.7
SHI22886 Sapria himalayana HOM05D000049 ORTHO05D000027 1.8e-13 79.7 65 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5565 Anthoceros agrestis HOM05D000049 ORTHO05D000027 2.4e-13 79.3 69 53.6
SMO147G0423 Selaginella moellendorffii HOM05D000049 ORTHO05D000027 2.4e-13 79.3 67 59.7
Manes.02G161350 Manihot esculenta HOM05D000049 ORTHO05D011980 1.6e-12 76.6 44 68.2
Manes.03G127202 Manihot esculenta HOM05D000049 ORTHO05D011980 1.6e-12 76.6 44 68.2
Manes.15G180834 Manihot esculenta HOM05D000049 ORTHO05D011980 1.6e-12 76.6 44 68.2
Prupe.5G036300 Prunus persica HOM05D000049 ORTHO05D000027 1.6e-12 76.6 63 58.7
Manes.07G060000 Manihot esculenta HOM05D001159 ORTHO05D014949 2.7e-12 75.9 53 60.4
Manes.01G002350 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.01G054104 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.07G069732 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.12G112901 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.13G085501 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.13G088960 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.15G176808 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.15G179066 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.17G014801 Manihot esculenta HOM05D000389 ORTHO05D011980 4.5e-12 75.1 38 78.9
Manes.03G072500 Manihot esculenta HOM05D000049 ORTHO05D011980 5.9e-12 74.7 38 78.9
Manes.15G179612 Manihot esculenta HOM05D000049 ORTHO05D011980 1.3e-11 73.6 38 78.9
Manes.05G135126 Manihot esculenta HOM05D000049 ORTHO05D011980 2.3e-11 72.8 38 78.9
Manes.18G141025 Manihot esculenta HOM05D000389 ORTHO05D011980 2.3e-11 72.8 38 76.3
Manes.06G000133 Manihot esculenta HOM05D000049 ORTHO05D011980 2.5e-10 69.3 38 73.7
Pp3c8_12060 Physcomitrium patens HOM05D000728 ORTHO05D001474 5.6e-10 68.2 66 47.0
Cre01.g005550 Chlamydomonas reinhardtii HOM05D000049 ORTHO05D000027 4.0e-08 62.0 67 47.8
PRCOL_00005049 Prasinoderma coloniale HOM05D000049 ORTHO05D000027 5.2e-08 61.6 45 57.8
MCO01G341 Micromonas commoda HOM05D000049 ORTHO05D000027 1.5e-07 60.1 47 57.4
MCO01G435 Micromonas commoda HOM05D000049 ORTHO05D000027 1.5e-07 60.1 47 57.4


User provided reference genes

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