Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 2.4e-50 201.8 101 100.0
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.0e-40 169.9 96 85.4
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.4e-37 158.7 95 80.0
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 1.4e-34 149.4 95 75.8
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.5e-34 148.7 95 74.7
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 5.5e-34 147.5 95 75.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 1.6e-33 146.0 95 74.7
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.6e-33 146.0 95 73.7
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.6e-33 146.0 95 73.7
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.6e-33 146.0 95 73.7
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.7e-33 145.2 95 74.7
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 7.9e-33 143.7 95 72.6
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 7.9e-33 143.7 95 73.7
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 1.8e-32 142.5 97 70.1
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.8e-32 142.5 100 70.0
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 1.8e-32 142.5 95 72.6
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.8e-32 142.5 101 72.3
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 1.8e-32 142.5 95 73.7
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.8e-32 142.5 95 73.7
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 1.8e-32 142.5 95 71.6
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 3.0e-32 141.7 95 71.6
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 3.0e-32 141.7 95 70.5
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 3.9e-32 141.4 93 73.1
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 3.9e-32 141.4 95 71.6
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 3.9e-32 141.4 95 70.5
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 5.1e-32 141.0 95 72.6
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 6.7e-32 140.6 95 70.5
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 6.7e-32 140.6 95 72.6
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 6.7e-32 140.6 95 71.6
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 8.7e-32 140.2 95 70.5
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.1e-31 139.8 93 72.0
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.1e-31 139.8 93 72.0
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 1.1e-31 139.8 93 72.0
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.5e-31 139.4 95 69.5
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.5e-31 139.4 95 67.4
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 2.5e-31 138.7 95 69.5
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 2.5e-31 138.7 93 72.0
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 4.3e-31 137.9 95 68.4
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 4.3e-31 137.9 93 68.8
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 5.7e-31 137.5 94 71.3
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 5.7e-31 137.5 93 71.0
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 5.7e-31 137.5 93 71.0
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 5.7e-31 137.5 95 70.5
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 7.4e-31 137.1 95 68.4
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 7.4e-31 137.1 95 68.4
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 7.4e-31 137.1 95 70.5
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 9.7e-31 136.7 93 72.0
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.3e-30 136.3 95 67.4
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.3e-30 136.3 95 68.4
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 1.6e-30 136.0 91 67.0
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.6e-30 136.0 95 68.4
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 1.6e-30 136.0 95 67.4
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 2.2e-30 135.6 89 73.0
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.2e-30 135.6 93 67.7
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 2.2e-30 135.6 93 69.9
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 2.2e-30 135.6 93 71.0
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 2.8e-30 135.2 98 61.2
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 3.7e-30 134.8 93 67.7
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 3.7e-30 134.8 93 67.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 3.7e-30 134.8 90 71.1
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 3.7e-30 134.8 95 65.3
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 3.7e-30 134.8 93 67.7
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 4.8e-30 134.4 95 66.3
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 4.8e-30 134.4 95 66.3
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 4.8e-30 134.4 89 71.9
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 4.8e-30 134.4 93 65.6
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 4.8e-30 134.4 93 66.7
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 4.8e-30 134.4 93 65.6
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 6.3e-30 134.0 93 66.7
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 6.3e-30 134.0 93 66.7
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 8.2e-30 133.7 93 64.5
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 8.2e-30 133.7 95 65.3
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 8.2e-30 133.7 93 67.7
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.1e-29 133.3 95 64.2
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.4e-29 132.9 95 65.3
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.8e-29 132.5 95 67.4
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.8e-29 132.5 93 65.6
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 1.8e-29 132.5 93 63.4
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.4e-29 132.1 93 66.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 2.4e-29 132.1 94 64.9
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 3.1e-29 131.7 94 64.9
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 4.1e-29 131.3 95 63.2
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 6.9e-29 130.6 95 63.2
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 9.0e-29 130.2 94 63.8
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 9.0e-29 130.2 93 64.5
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 9.0e-29 130.2 95 63.2
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 9.0e-29 130.2 95 63.2
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 9.0e-29 130.2 91 64.8
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 9.0e-29 130.2 94 71.3
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 9.0e-29 130.2 95 66.3
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 1.2e-28 129.8 95 62.1
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 1.5e-28 129.4 97 62.9
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 1.5e-28 129.4 95 64.2
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 2.0e-28 129.0 94 64.9
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 2.6e-28 128.6 95 62.1
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 3.4e-28 128.3 95 61.1
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 3.4e-28 128.3 95 61.1
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 3.4e-28 128.3 95 61.1
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 3.4e-28 128.3 95 61.1
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 4.5e-28 127.9 94 62.8
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.5e-28 127.9 93 64.5
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 4.5e-28 127.9 122 59.0
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 5.9e-28 127.5 98 64.3
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 1.7e-27 125.9 95 60.0
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 1.7e-27 125.9 95 60.0
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.7e-27 125.9 96 64.6
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 2.2e-27 125.6 94 61.7
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.2e-27 125.6 93 65.6
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 3.8e-27 124.8 93 60.2
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 5.0e-27 124.4 95 58.9
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 6.5e-27 124.0 95 61.1
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 6.5e-27 124.0 95 61.1
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 6.5e-27 124.0 109 56.9
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 1.1e-26 123.2 101 58.4
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 2.5e-26 122.1 94 60.6
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 4.2e-26 121.3 95 57.9
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 5.5e-26 120.9 93 58.1
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 1.6e-25 119.4 87 66.7
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 1.0e-24 116.7 146 45.9
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.4e-24 116.3 89 60.7
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 8.8e-24 113.6 89 59.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 8.8e-24 113.6 70 74.3
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.5e-23 112.8 90 57.8
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 2.0e-23 112.5 131 45.8
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 2.0e-23 112.5 62 87.1
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 2.2e-22 109.0 71 69.0
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 6.3e-22 107.5 91 52.7
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.8e-21 105.9 67 73.1
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 9.1e-21 103.6 91 53.8
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 9.1e-21 103.6 64 71.9
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 5.9e-20 100.9 68 64.7
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.0e-19 100.1 65 70.8
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 1.7e-19 99.4 68 61.8
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 2.2e-19 99.0 65 69.2
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 2.2e-19 99.0 61 72.1
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 2.2e-19 99.0 66 66.7
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 5.0e-19 97.8 64 65.6
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 8.5e-19 97.1 87 55.2
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-18 95.5 68 61.8
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 7.2e-18 94.0 67 67.2
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 9.4e-18 93.6 64 60.9
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 2.3e-16 89.0 64 64.1
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 2.0e-15 85.9 62 59.7
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 7.0e-13 77.4 100 39.0
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.2e-12 76.6 97 49.5
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 5.9e-12 74.3 90 37.8
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.2e-10 68.6 61 47.5
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 1.2e-09 66.6 81 38.3


User provided reference genes

Program Settings