Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22404 Utricularia gibba HOM05D004827 ORTHO05D005395 1.6e-103 379.4 191 100.0
MSTRG.17890 Avicennia marina HOM05D004827 ORTHO05D005395 3.3e-48 195.7 126 76.2
SGA_v2.0_scaffold116G32194 Striga asiatica HOM05D004827 ORTHO05D005395 3.3e-48 195.7 169 62.7
SalBow3G2012 Salvia bowleyana HOM05D004827 ORTHO05D005395 1.4e-46 190.3 164 61.6
MSTRG.21095 Avicennia marina HOM05D004827 ORTHO05D005395 2.9e-44 182.6 117 76.9
Migut.D02265 Erythranthe guttata HOM05D004827 ORTHO05D005395 2.9e-44 182.6 126 70.6
SGA_v2.0_scaffold263G45967 Striga asiatica HOM05D004827 ORTHO05D005395 2.5e-43 179.5 117 76.1
Nitab4.5_0004993g0010 Nicotiana tabacum HOM05D004827 ORTHO05D005395 2.7e-42 176.0 125 65.6
Sopen11g027750 Solanum pennellii HOM05D004827 ORTHO05D005395 4.6e-42 175.3 125 66.4
PGSC0003DMG400008074 Solanum tuberosum HOM05D004827 ORTHO05D005395 1.3e-41 173.7 125 65.6
Lj2A1013G28 Lonicera japonica HOM05D004827 ORTHO05D005395 1.8e-41 173.3 125 64.8
CAN.G546.14 Capsicum annuum HOM05D004827 ORTHO05D005395 5.1e-41 171.8 125 66.4
CDE06G2782 Ceratophyllum demersum HOM05D004827 ORTHO05D005395 6.7e-41 171.4 125 65.6
Nitab4.5_0001442g0020 Nicotiana tabacum HOM05D004827 ORTHO05D005395 6.7e-41 171.4 125 64.8
Os05g0295800 Oryza sativa ssp. japonica HOM05D004827 ORTHO05D005395 1.9e-40 169.9 195 52.3
Actinidia24133 Actinidia chinensis HOM05D004827 ORTHO05D005395 2.5e-40 169.5 168 54.2
Ah.01g003210 Amaranthus hybridus HOM05D004827 ORTHO05D005395 2.5e-40 169.5 132 63.6
COL.COLO4_11061 Corchorus olitorius HOM05D004827 ORTHO05D005395 2.5e-40 169.5 192 49.5
TAR633G0460 Trochodendron aralioides HOM05D004827 ORTHO05D005395 2.5e-40 169.5 125 63.2
CSS0005897 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 3.3e-40 169.1 127 64.6
Rhsim13G0099200 Rhododendron simsii HOM05D004827 ORTHO05D005395 3.3e-40 169.1 190 48.4
ClCG03G002770 Citrullus lanatus HOM05D004827 ORTHO05D005395 5.7e-40 168.3 168 52.4
Prupe.6G109100 Prunus persica HOM05D004827 ORTHO05D005395 5.7e-40 168.3 133 62.4
Solyc11g069040.3 Solanum lycopersicum HOM05D004827 ORTHO05D005395 5.7e-40 168.3 115 68.7
Thecc.09G349000 Theobroma cacao HOM05D004827 ORTHO05D005395 7.4e-40 167.9 175 52.0
vmacro03268 Vaccinium macrocarpon HOM05D004827 ORTHO05D005395 7.4e-40 167.9 151 57.0
Aqoxy1G01146 Aquilegia oxysepala HOM05D004827 ORTHO05D005395 1.3e-39 167.2 173 51.4
PGR102G0165 Punica granatum HOM05D004827 ORTHO05D005395 1.3e-39 167.2 136 60.3
ATR0219G018 Amborella trichopoda HOM05D004827 ORTHO05D005395 1.6e-39 166.8 153 54.9
Dinv34726 Davidia involucrata HOM05D004827 ORTHO05D005395 1.6e-39 166.8 189 49.7
Psat0s3927g0040 Pisum sativum HOM05D004827 ORTHO05D005395 2.2e-39 166.4 114 69.3
PSO063G0803 Papaver somniferum HOM05D004827 ORTHO05D005395 2.8e-39 166.0 114 66.7
CSS0024800 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 6.3e-39 164.9 146 56.8
PSO339G5318 Papaver somniferum HOM05D004827 ORTHO05D005395 6.3e-39 164.9 114 65.8
CiPaw.13G119600 Carya illinoinensis HOM05D004827 ORTHO05D005395 1.1e-38 164.1 136 59.6
AUR62014938 Chenopodium quinoa HOM05D004827 ORTHO05D005395 1.1e-38 164.1 154 54.5
AUR62029203 Chenopodium quinoa HOM05D004827 ORTHO05D005395 1.1e-38 164.1 154 54.5
Duzib150G1276 Durio zibethinus HOM05D004827 ORTHO05D005395 1.1e-38 164.1 115 66.1
Phvul.011G084400 Phaseolus vulgaris HOM05D004827 ORTHO05D005395 1.1e-38 164.1 149 55.7
Medtr4g057685 Medicago truncatula HOM05D004827 ORTHO05D005395 1.4e-38 163.7 115 67.0
EL10Ac9g22587 Beta vulgaris HOM05D004827 ORTHO05D005395 1.8e-38 163.3 128 61.7
A06p05180 Brassica napus HOM05D004827 ORTHO05D005395 1.8e-38 163.3 171 53.2
Ciclev10029169m.g Citrus clementina HOM05D004827 ORTHO05D005395 1.8e-38 163.3 136 58.8
Potri.009G007200 Populus trichocarpa HOM05D004827 ORTHO05D005395 1.8e-38 163.3 97 77.3
Hund01469 Selenicereus undatus HOM05D004827 ORTHO05D005395 1.8e-38 163.3 198 48.5
HPP92_002620 Vanilla planifolia HOM05D004827 ORTHO05D005395 1.8e-38 163.3 147 59.2
HPP92_002675 Vanilla planifolia HOM05D004827 ORTHO05D005395 1.8e-38 163.3 166 54.2
Thhalv10008645m.g Eutrema salsugineum HOM05D004827 ORTHO05D005395 2.4e-38 162.9 155 54.8
TPR.G6148 Trifolium pratense HOM05D004827 ORTHO05D005395 3.1e-38 162.5 125 63.2
Sc15g0001580 Simmondsia chinensis HOM05D004827 ORTHO05D005395 4.1e-38 162.2 136 58.8
Carub.0001s0746 Capsella rubella HOM05D004827 ORTHO05D005395 5.3e-38 161.8 152 56.6
Lj3g0013572 Lotus japonicus HOM05D004827 ORTHO05D005395 5.3e-38 161.8 128 60.2
Sabra09G0004200 Salix brachista HOM05D004827 ORTHO05D005395 5.3e-38 161.8 97 77.3
THA.LOC104808316 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 5.3e-38 161.8 170 51.8
Sed0007609 Sechium edule HOM05D004827 ORTHO05D005395 6.9e-38 161.4 187 48.1
GSVIVG01031499001 Vitis vinifera HOM05D004827 ORTHO05D005395 6.9e-38 161.4 199 46.7
Zm00001eb086540 Zea mays HOM05D004827 ORTHO05D005395 6.9e-38 161.4 171 54.4
Atru.chr3.3541 Acer truncatum HOM05D004827 ORTHO05D005395 9.1e-38 161.0 96 75.0
CSS0040325 Camellia sinensis var. sinensis HOM05D004827 ORTHO05D005395 9.1e-38 161.0 145 55.9
Lsat_1_v5_gn_1_62721 Lactuca sativa HOM05D004827 ORTHO05D005395 9.1e-38 161.0 184 48.9
C05p06230 Brassica napus HOM05D004827 ORTHO05D005395 1.2e-37 160.6 175 52.6
BolC5t29377H Brassica oleracea HOM05D004827 ORTHO05D005395 1.2e-37 160.6 170 52.9
Haze_23732 Corylus avellana HOM05D004827 ORTHO05D005395 1.2e-37 160.6 168 53.6
TWI38G0398 Tripterygium wilfordii HOM05D004827 ORTHO05D005395 1.2e-37 160.6 137 56.9
BcaC05g24729 Brassica carinata HOM05D004827 ORTHO05D005395 1.5e-37 160.2 152 57.2
Nn6g35282 Nelumbo nucifera HOM05D004827 ORTHO05D005395 2.0e-37 159.8 147 53.7
FAN25G1724 Fragaria x ananassa HOM05D004827 ORTHO05D005395 2.6e-37 159.5 153 54.9
Lalb_Chr03g0027631 Lupinus albus HOM05D004827 ORTHO05D005395 2.6e-37 159.5 143 53.8
Manes.04G014900 Manihot esculenta HOM05D004827 ORTHO05D005395 2.6e-37 159.5 192 48.4
VMungo1127G2270 Vigna mungo HOM05D004827 ORTHO05D005395 2.6e-37 159.5 114 64.9
MBI12_g32344_MAGBIO Magnolia biondii HOM05D004827 ORTHO05D005395 3.4e-37 159.1 166 51.2
AT1G08110 Arabidopsis thaliana HOM05D004827 ORTHO05D005395 4.5e-37 158.7 115 64.3
CARHR007920 Cardamine hirsuta HOM05D004827 ORTHO05D005395 4.5e-37 158.7 115 63.5
Glyma.12G079700 Glycine max HOM05D004827 ORTHO05D005395 4.5e-37 158.7 125 58.4
Cfa010307 Carpinus fangiana HOM05D004827 ORTHO05D005395 5.9e-37 158.3 125 60.8
Gohir.D13G238300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 5.9e-37 158.3 170 50.0
Gorai.013G269200 Gossypium raimondii HOM05D004827 ORTHO05D005395 5.9e-37 158.3 170 50.0
MD11G1146100 Malus domestica HOM05D004827 ORTHO05D005395 5.9e-37 158.3 114 65.8
MELO3C004950.2 Cucumis melo HOM05D004827 ORTHO05D005395 7.7e-37 157.9 114 64.9
Sp1g06750 Schrenkiella parvula HOM05D004827 ORTHO05D005395 7.7e-37 157.9 173 49.1
BcaB07g34053 Brassica carinata HOM05D004827 ORTHO05D005395 1.0e-36 157.5 115 65.2
FAN16G1413 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.0e-36 157.5 136 58.1
Gohir.A13G232600 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.0e-36 157.5 114 64.0
CANSAT78G0379 Cannabis sativa HOM05D004827 ORTHO05D005395 1.3e-36 157.1 167 53.3
Cpa.g.sc65.38 Carica papaya HOM05D004827 ORTHO05D005395 1.3e-36 157.1 136 56.6
CsaV3_1G013530 Cucumis sativus L. HOM05D004827 ORTHO05D005395 1.3e-36 157.1 169 51.5
FvH4_3g30960 Fragaria vesca HOM05D004827 ORTHO05D005395 1.3e-36 157.1 136 57.4
FAN11G0101 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.3e-36 157.1 136 57.4
FAN21G3549 Fragaria x ananassa HOM05D004827 ORTHO05D005395 1.3e-36 157.1 136 57.4
HanXRQChr11g0346211 Helianthus annuus HOM05D004827 ORTHO05D005395 1.7e-36 156.8 164 53.7
RcHm_v2.0_Chr5g0057511 Rosa chinensis HOM05D004827 ORTHO05D005395 2.9e-36 156.0 168 51.8
SEGI_26473 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 2.9e-36 156.0 115 62.6
SEGI_34492 Sequoiadendron giganteum HOM05D004827 ORTHO05D005395 2.9e-36 156.0 115 62.6
Cc01_g10500 Coffea canephora HOM05D004827 ORTHO05D005395 3.8e-36 155.6 137 56.2
Glyma.11G194300 Glycine max HOM05D004827 ORTHO05D005395 3.8e-36 155.6 133 55.6
MD00G1032700 Malus domestica HOM05D004827 ORTHO05D005395 5.0e-36 155.2 96 72.9
SMO353G0047 Selaginella moellendorffii HOM05D004827 ORTHO05D005395 8.5e-36 154.5 116 62.9
Aa31sc241G20 Aethionema arabicum HOM05D004827 ORTHO05D005395 1.9e-35 153.3 158 50.6
AL1G18470 Arabidopsis lyrata HOM05D004827 ORTHO05D005395 1.9e-35 153.3 115 61.7
BraA06t23724Z Brassica rapa HOM05D004827 ORTHO05D005395 1.9e-35 153.3 175 50.9
Ah.01g003220 Amaranthus hybridus HOM05D004827 ORTHO05D005395 3.2e-35 152.5 114 62.3
Ca_19305_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 7.2e-35 151.4 115 62.6
Duzib170G0342 Durio zibethinus HOM05D004827 ORTHO05D005395 7.2e-35 151.4 115 61.7
ECA248G1504 Erigeron canadensis HOM05D004827 ORTHO05D005395 7.9e-34 147.9 109 63.3
Gohir.A03G030200 Gossypium hirsutum HOM05D004827 ORTHO05D005395 7.9e-34 147.9 136 52.2
Mapoly0033s0083 Marchantia polymorpha HOM05D004827 ORTHO05D005395 7.9e-34 147.9 95 72.6
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea HOM05D004827 ORTHO05D005395 1.8e-33 146.7 119 60.5
Gohir.D03G138300 Gossypium hirsutum HOM05D004827 ORTHO05D005395 3.9e-33 145.6 134 52.2
Gorai.003G145000 Gossypium raimondii HOM05D004827 ORTHO05D005395 3.9e-33 145.6 134 52.2
arahy.Tifrunner.gnm1.ann1.4ZYX81 Arachis hypogaea HOM05D004827 ORTHO05D005395 6.7e-33 144.8 119 59.7
Gohir.D03G138500 Gossypium hirsutum HOM05D004827 ORTHO05D005395 6.7e-33 144.8 116 57.8
Gorai.003G145200 Gossypium raimondii HOM05D004827 ORTHO05D005395 6.7e-33 144.8 116 57.8
Gohir.A03G030100 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.5e-32 143.7 134 51.5
Gohir.D03G138400 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.5e-32 143.7 134 51.5
Gorai.003G145100 Gossypium raimondii HOM05D004827 ORTHO05D005395 1.5e-32 143.7 134 51.5
HanXRQChr01g0019511 Helianthus annuus HOM05D004827 ORTHO05D005395 1.5e-32 143.7 96 70.8
Oeu018368.2 Olea europaea HOM05D004827 ORTHO05D005395 3.3e-32 142.5 150 52.0
Mapoly0033s0085 Marchantia polymorpha HOM05D004827 ORTHO05D005395 7.4e-32 141.4 95 72.6
Gohir.A03G030000 Gossypium hirsutum HOM05D004827 ORTHO05D005395 9.7e-32 141.0 134 50.7
Peaxi162Scf00682g00012 Petunia axillaris HOM05D004827 ORTHO05D005395 2.8e-31 139.4 127 56.7
SGA_v2.0_scaffold180G39601 Striga asiatica HOM05D004827 ORTHO05D005395 6.3e-31 138.3 108 62.0
THA.LOC104800584 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 2.4e-30 136.3 170 46.5
Pp3c10_11200 Physcomitrium patens HOM05D004827 ORTHO05D005395 5.3e-30 135.2 180 47.8
ECA248G0211 Erigeron canadensis HOM05D004827 ORTHO05D005395 2.6e-29 132.9 128 50.8
THA.LOC104817647 Tarenaya hassleriana HOM05D004827 ORTHO05D005395 5.5e-27 125.2 88 65.9
Cre04.g216100 Chlamydomonas reinhardtii HOM05D004827 ORTHO05D005395 1.4e-25 120.6 107 51.4
Glyma.11G194200 Glycine max HOM05D004827 ORTHO05D005395 2.6e-24 116.3 89 60.7
BcaB07g34056 Brassica carinata HOM05D004827 ORTHO05D005395 4.8e-23 112.1 156 43.6
Gohir.D03G138550 Gossypium hirsutum HOM05D004827 ORTHO05D005395 1.0e-20 104.4 83 61.4
Gorai.003G145300 Gossypium raimondii HOM05D004827 ORTHO05D005395 1.0e-20 104.4 83 61.4
Pp3c1_34670 Physcomitrium patens HOM05D004827 ORTHO05D005395 2.5e-19 99.8 97 51.5
CBR_g8002 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-18 96.7 78 59.0
C07p01610 Brassica napus HOM05D004827 ORTHO05D005395 3.6e-18 95.9 59 72.9
RcHm_v2.0_Chr5g0057571 Rosa chinensis HOM05D004827 ORTHO05D005395 5.7e-16 88.6 67 61.2
QL01p015675 Quercus lobata HOM05D004827 ORTHO05D005395 4.8e-15 85.5 112 49.1
Hma1.2p1_1647F.1_g295520 Hydrangea macrophylla HOM05D004827 ORTHO05D005395 6.3e-15 85.1 71 54.9
C03p63280 Brassica napus HOM05D004827 ORTHO05D005395 4.1e-14 82.4 55 70.9
QL01p015669 Quercus lobata HOM05D004827 ORTHO05D005395 4.1e-14 82.4 67 56.7
BcaC01g02577 Brassica carinata HOM05D004827 ORTHO05D005395 9.1e-14 81.3 57 68.4
Ca_19304_v3 Cicer arietinum L. HOM05D004827 ORTHO05D005395 1.2e-13 80.9 48 77.1
BolC3t18580H Brassica oleracea HOM05D004827 ORTHO05D005395 2.0e-13 80.1 55 69.1
Oeu018480.1 Olea europaea HOM05D004827 ORTHO05D005395 2.0e-13 80.1 58 63.8
Pp3c14_6610 Physcomitrium patens HOM05D004827 ORTHO05D005395 8.5e-12 74.7 69 52.2
PRCOL_00001503 Prasinoderma coloniale HOM05D004827 ORTHO05D005395 1.7e-07 60.5 85 44.7
AUR62029205 Chenopodium quinoa HOM05D004827 ORTHO05D005395 6.3e-07 58.5 56 50.0
Cfa025448 Carpinus fangiana HOM05D004827 ORTHO05D005395 8.3e-07 58.2 77 41.6


User provided reference genes

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