Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.0e-96 356.7 177 100.0
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.2e-82 308.1 177 85.3
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 7.2e-82 307.4 176 86.4
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 3.6e-81 305.1 177 84.7
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 1.0e-80 303.5 177 84.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.0e-80 303.5 177 84.7
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.4e-80 303.1 176 84.7
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.4e-80 303.1 176 84.7
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 1.8e-80 302.8 177 84.7
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 3.0e-80 302.0 180 82.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.6e-79 298.9 177 83.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 2.6e-79 298.9 180 82.2
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 4.4e-79 298.1 177 83.1
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 7.5e-79 297.4 178 82.6
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.8e-79 297.0 180 81.1
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 9.8e-79 297.0 177 81.4
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.3e-78 296.6 177 81.9
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.3e-78 296.6 169 85.2
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.2e-78 295.8 169 85.2
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.8e-78 295.4 177 80.2
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 4.9e-78 294.7 168 86.3
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 6.3e-78 294.3 169 85.2
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 6.3e-78 294.3 181 81.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.1e-77 293.5 175 82.9
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 1.1e-77 293.5 175 82.3
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.8e-77 292.7 200 76.0
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 5.4e-77 291.2 180 78.3
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.4e-77 291.2 177 80.8
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 7.0e-77 290.8 177 80.8
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 9.2e-77 290.4 180 80.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 9.2e-77 290.4 180 80.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-76 290.0 177 81.4
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-76 290.0 177 81.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 1.2e-76 290.0 169 85.2
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 2.0e-76 289.3 180 78.9
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.5e-76 288.5 177 81.4
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.5e-76 288.5 177 80.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 4.5e-76 288.1 176 81.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 5.9e-76 287.7 182 76.4
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.8e-76 287.3 177 80.8
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 7.8e-76 287.3 178 80.3
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 7.8e-76 287.3 179 80.4
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.7e-75 286.2 166 84.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 3.9e-75 285.0 169 82.8
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.6e-75 284.3 180 79.4
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 4.3e-74 281.6 161 85.1
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.6e-74 281.2 177 78.5
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 5.6e-74 281.2 176 77.8
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 7.3e-74 280.8 176 77.8
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 9.5e-74 280.4 180 77.8
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.6e-73 279.6 175 77.1
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.6e-73 279.6 183 76.5
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.0e-73 277.3 176 76.7
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 8.0e-73 277.3 161 82.6
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 1.0e-72 276.9 176 75.6
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 1.0e-72 276.9 158 84.8
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-72 276.6 175 76.6
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.4e-72 276.6 161 82.6
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 5.2e-72 274.6 179 77.1
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 8.9e-72 273.9 179 76.5
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 8.9e-72 273.9 180 77.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 1.2e-71 273.5 179 76.5
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 1.2e-71 273.5 186 74.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-71 273.5 158 83.5
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.2e-71 273.5 179 76.0
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-71 272.7 175 76.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.4e-71 271.9 158 82.9
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 5.8e-71 271.2 187 73.8
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.8e-71 271.2 180 76.1
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 1.3e-70 270.0 160 81.9
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 1.3e-70 270.0 158 81.6
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.3e-70 270.0 177 75.7
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.7e-70 269.6 158 82.9
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.7e-70 269.6 158 82.9
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.7e-70 269.6 177 75.7
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.2e-70 269.2 180 73.3
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.9e-70 268.9 156 84.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 173 77.5
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 3.7e-70 268.5 158 82.3
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.7e-70 268.5 172 76.2
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 3.7e-70 268.5 162 80.2
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 6.4e-70 267.7 158 81.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 6.4e-70 267.7 164 79.3
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 8.3e-70 267.3 180 72.8
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.4e-69 266.5 175 74.3
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 2.4e-69 265.8 175 77.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 3.2e-69 265.4 189 70.9
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.2e-69 265.4 160 80.6
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 4.1e-69 265.0 167 78.4
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 5.4e-69 264.6 160 80.6
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.2e-68 263.5 175 76.6
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.7e-68 262.3 180 73.3
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.5e-68 261.9 169 76.9
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 3.5e-68 261.9 158 81.0
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 4.6e-68 261.5 175 73.1
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.7e-67 259.6 145 85.5
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 3.0e-67 258.8 145 88.3
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 5.0e-67 258.1 145 86.9
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.1e-66 256.9 158 77.8
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.9e-66 256.1 169 76.9
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 7.3e-66 254.2 144 86.8
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 9.5e-66 253.8 169 76.3
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.1e-64 250.4 170 74.7
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.1e-64 250.4 176 67.6
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 1.4e-64 250.0 144 84.7
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-64 250.0 142 85.2
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.8e-64 249.6 148 83.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-63 246.9 172 71.5
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.6e-63 245.7 158 75.9
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 7.5e-63 244.2 137 88.3
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.1e-61 240.4 140 82.1
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.4e-61 239.2 173 70.5
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 9.2e-61 237.3 137 86.1
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-60 236.9 177 70.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 8.6e-59 230.7 159 73.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.2e-57 226.9 153 71.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.2e-55 220.3 162 69.8
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 1.1e-53 213.8 135 79.3
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 6.0e-52 208.0 164 56.7
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-50 203.4 155 68.4
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.6e-49 199.9 176 54.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.7e-46 189.9 109 85.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.7e-46 189.9 143 67.8
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 2.2e-46 189.5 117 77.8
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 8.4e-46 187.6 117 81.2
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.2e-44 183.7 110 79.1
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 7.8e-44 181.0 126 70.6
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.8e-41 172.6 112 75.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 7.6e-39 164.5 149 54.4
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.4e-37 158.3 111 70.3
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 1.6e-36 156.8 100 75.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.0e-35 154.1 127 63.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 5.1e-35 151.8 185 49.2
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.1e-33 144.4 77 87.0
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-31 139.4 120 60.8
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.4e-31 139.0 120 61.7
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.4e-31 139.0 82 80.5
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.5e-28 129.0 77 76.6
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 4.6e-28 128.6 89 70.8
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.3e-27 127.1 68 86.8
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.8e-27 126.7 77 79.2
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.8e-25 119.4 131 51.9
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 9.0e-24 114.4 120 58.3
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.8e-23 111.7 64 85.9
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.5e-18 96.3 52 88.5
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.3e-18 95.5 77 63.6
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 6.2e-17 91.7 66 68.2
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 1.3e-14 84.0 58 63.8
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 3.8e-14 82.4 58 69.0
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 5.0e-06 55.5 33 78.8


User provided reference genes

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