Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 2038.1 1037 100.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 1585.9 1116 72.8
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 1585.5 1182 69.5
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1580.5 1118 72.5
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 1561.2 1118 72.1
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 1550.4 1109 72.2
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 1535.4 1182 67.4
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 1524.6 1182 66.8
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 1522.7 1140 68.2
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 1520.0 1182 67.0
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 1518.4 1177 66.9
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1517.7 1118 69.0
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 1513.8 1182 66.5
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 1513.0 1118 68.9
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 1509.6 1182 66.8
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 1509.2 1118 68.7
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 1509.2 1181 66.2
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 1506.5 1181 66.7
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 1506.1 1181 66.5
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 1504.2 1178 66.5
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 1499.2 1181 66.5
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1499.2 1184 66.6
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1497.3 1068 71.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1496.1 1181 66.4
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 1494.6 1197 65.3
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 1494.2 1182 65.8
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 1493.4 1175 66.0
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 1492.6 1196 65.4
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1492.2 1187 66.0
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1492.2 1194 65.8
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 1489.6 1182 65.3
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1489.2 1194 65.7
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1489.2 1182 65.7
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1488.0 1194 65.6
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1486.5 1157 66.5
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 1485.3 1187 65.1
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1482.6 1182 65.7
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 1481.5 1182 65.4
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 1478.4 1182 65.5
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1477.6 1182 65.7
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 1476.1 1181 65.4
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 1475.7 1110 68.0
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 1475.7 1188 65.1
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 1473.4 1165 65.5
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 1473.4 1182 64.6
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1472.6 1216 63.7
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1472.6 1182 65.1
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 1467.2 1182 65.6
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 1459.1 1182 64.9
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 1457.2 1179 65.0
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 1456.4 1181 64.9
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 1455.3 1190 65.0
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 1454.9 1181 65.0
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 1454.9 1181 64.8
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 1452.2 1183 64.0
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 1452.2 1181 64.9
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1452.2 1182 65.1
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 1451.4 1253 61.8
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 1449.5 1181 64.9
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 1446.8 1183 64.9
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 1441.0 1193 64.5
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 1441.0 1166 64.8
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 1440.6 1185 64.6
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 1435.6 1197 63.8
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 1431.4 1160 64.9
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1429.1 1149 65.0
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 1420.6 1179 64.0
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 1417.9 1177 62.7
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1416.0 1182 62.9
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 1415.6 1189 63.3
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 1414.1 1184 63.9
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 1409.0 1182 62.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1397.5 1183 63.0
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1374.4 1117 63.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 1372.1 1194 62.1
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1325.5 1401 53.7
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1290.4 1163 58.5
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1276.9 1182 57.4
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1265.8 837 73.6
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1238.8 939 67.5
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1216.8 802 74.1
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1199.5 958 65.7
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1193.3 1089 57.9
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1187.2 830 71.0
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1181.4 798 72.2
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1164.4 1173 55.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1154.4 802 70.3
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1152.9 804 71.4
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1149.0 1072 58.2
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1146.0 803 71.2
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1109.4 1160 50.7
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1102.0 736 73.6
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1088.9 1143 50.0
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 1.9e-307 1059.3 847 63.6
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 1.8e-302 1042.7 1185 46.9
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 4.7e-298 1028.1 806 63.3
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 1.1e-294 1016.9 1126 46.9
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 4.7e-282 974.9 1160 45.9
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 7.6e-264 914.4 665 69.8
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 1.9e-238 830.1 803 55.8
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 4.4e-179 632.9 585 57.1
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 6.2e-157 559.3 456 66.0
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 4.6e-144 516.5 381 66.4
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 4.5e-139 500.0 501 53.5
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.7e-109 401.7 301 65.1
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 3.4e-107 394.0 244 77.9
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.0e-103 382.5 339 57.2
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.2e-101 374.8 502 46.8
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 7.0e-100 369.8 439 53.1
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.7e-88 331.3 402 47.3
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 1.0e-87 329.3 605 35.7
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 3.8e-74 284.3 226 63.3
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 8.0e-72 276.6 299 56.9
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 5.2e-71 273.9 299 57.2
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 9.8e-70 269.6 299 56.5
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 2.9e-69 268.1 299 54.8
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.0e-66 259.6 299 53.8
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 3.9e-66 257.7 226 65.9
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 5.6e-65 253.8 167 74.3
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 4.7e-64 250.8 191 73.3
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 7.5e-62 243.4 194 62.9
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 9.8e-62 243.0 307 49.5
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 2.9e-61 241.5 187 71.1
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 4.1e-60 237.7 283 52.7
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.0e-58 233.0 281 53.0
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 5.2e-55 220.7 301 43.2
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 2.9e-53 214.9 207 62.3
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 8.3e-53 213.4 142 69.7
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.3e-50 205.3 119 78.2
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 2.4e-47 195.3 322 32.3
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 6.6e-42 177.2 127 66.9
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 6.6e-42 177.2 127 68.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.1e-41 176.4 199 54.8
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 5.3e-39 167.5 161 52.2
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.3e-34 152.1 101 73.3
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 1.5e-33 149.4 101 72.3
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 8.1e-32 143.7 95 67.4
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.1e-31 141.7 113 60.2
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 3.4e-30 138.3 104 67.3
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.8e-30 137.5 184 47.3
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 4.9e-29 134.4 155 50.3
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.1e-26 124.4 82 70.7
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 2.8e-24 118.6 107 57.9
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 2.7e-19 102.1 73 64.4
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.6e-19 101.3 59 79.7
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 3.4e-14 85.1 154 40.3
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 4.5e-14 84.7 54 72.2
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 3.9e-10 71.6 88 47.7
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.6e-08 66.2 32 93.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.3e-07 61.2 43 65.1
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 2.6e-06 58.9 97 43.3


User provided reference genes

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