Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 0.0e+00 1104.7 564 100.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 3.9e-113 412.9 619 43.9
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 3.3e-112 409.8 598 44.1
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.4e-102 377.9 615 41.6
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 6.9e-102 375.6 625 41.9
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.1e-99 368.2 615 41.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-96 356.7 621 40.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 4.3e-96 356.3 638 41.7
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 4.8e-95 352.8 657 39.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 5.3e-94 349.4 596 41.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.5e-93 347.8 604 40.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 6.5e-92 342.4 556 41.7
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.9e-91 340.9 540 41.5
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 5.5e-91 339.3 534 40.8
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 9.4e-91 338.6 647 38.2
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.2e-90 338.2 627 38.6
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.8e-89 334.3 598 41.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.0e-88 330.9 599 40.1
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 2.5e-88 330.5 530 41.1
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 9.7e-88 328.6 620 39.5
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.3e-87 328.2 610 39.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 6.3e-87 325.9 618 37.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 6.3e-87 325.9 608 37.7
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.3e-87 325.9 534 41.6
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.2e-87 325.5 621 39.3
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 9.1e-86 322.0 520 39.6
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 9.1e-86 322.0 537 40.6
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.2e-85 321.6 542 40.4
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-84 318.2 608 38.7
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.1e-83 315.1 620 37.9
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.9e-83 314.3 282 57.8
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.2e-83 313.2 531 40.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 5.5e-83 312.8 541 39.9
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 5.5e-83 312.8 622 37.8
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 5.5e-83 312.8 616 37.7
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 7.2e-83 312.4 282 57.1
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.2e-82 311.6 282 57.4
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.6e-82 311.2 272 58.8
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 3.6e-82 310.1 619 37.5
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 4.7e-82 309.7 344 51.7
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.1e-82 309.3 603 40.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.9e-82 308.9 632 37.2
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.8e-81 307.8 625 36.8
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 3.0e-81 307.0 621 36.7
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.9e-81 306.6 632 37.0
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 6.7e-81 305.8 606 38.4
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.1e-80 305.1 603 39.3
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 4.4e-80 303.1 566 38.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.7e-80 302.8 483 41.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.2e-79 300.8 601 38.3
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.4e-78 298.1 605 38.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.1e-78 297.0 577 39.7
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.1e-78 297.0 633 36.7
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.1e-78 296.6 493 40.6
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 4.1e-78 296.6 611 37.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 4.1e-78 296.6 581 37.9
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 7.0e-78 295.8 480 40.8
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.2e-77 295.0 587 39.4
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.5e-77 293.5 583 38.4
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 4.5e-77 293.1 506 40.1
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.9e-77 292.7 283 55.8
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 1.0e-76 292.0 555 35.9
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.3e-76 291.6 541 36.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.3e-76 291.6 495 39.6
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.7e-76 291.2 588 38.6
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.9e-76 290.4 635 35.3
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 2.9e-76 290.4 726 33.5
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 3.8e-76 290.0 573 37.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 8.5e-76 288.9 508 41.7
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 8.5e-76 288.9 585 39.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.1e-75 288.5 556 36.3
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.4e-75 288.1 517 38.3
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.9e-75 287.7 505 38.0
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 4.2e-75 286.6 595 37.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 2.7e-74 283.9 615 34.8
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 4.7e-74 283.1 501 38.9
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.1e-72 278.5 506 38.7
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.5e-72 278.1 496 40.9
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 1.5e-72 278.1 286 52.4
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.3e-72 276.9 501 39.5
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 3.3e-72 276.9 289 54.3
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 4.4e-72 276.6 641 35.6
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 5.7e-72 276.2 660 33.8
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 4.1e-70 270.0 496 39.7
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 4.1e-70 270.0 496 39.7
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 4.1e-70 270.0 496 39.7
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 5.3e-70 269.6 490 39.6
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.3e-68 265.0 483 39.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.2e-68 264.2 294 50.0
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 1.5e-67 261.5 628 32.8
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.5e-67 261.5 541 36.4
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.2e-67 260.4 647 33.4
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 8.0e-66 255.8 337 45.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.0e-65 255.4 633 32.7
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-65 255.4 633 32.7
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-65 254.6 638 33.1
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 4.0e-65 253.4 560 35.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 6.8e-65 252.7 633 33.0
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 6.8e-65 252.7 478 37.0
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.2e-63 247.7 569 35.3
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.8e-63 247.3 528 36.6
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.1e-62 243.8 613 33.9
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 7.0e-62 242.7 381 41.5
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 5.0e-60 236.5 481 36.2
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.7e-58 229.9 454 36.1
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.4e-57 228.4 295 44.4
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 2.3e-57 227.6 223 52.9
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 9.8e-56 222.2 458 35.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.2e-55 221.1 316 40.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.8e-55 219.9 622 32.6
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.8e-55 219.9 287 45.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 5.4e-54 216.5 299 41.8
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 7.0e-54 216.1 442 37.1
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 3.8e-52 210.3 271 45.0
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-51 208.8 271 44.6
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-51 208.4 638 30.4
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.8e-50 204.1 271 44.3
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.8e-49 201.4 270 45.6
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.9e-49 199.1 271 44.6
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 3.2e-46 190.7 339 36.0
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.7e-44 184.9 419 32.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.9e-44 183.7 249 46.2
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.9e-44 183.7 625 31.5
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.2e-42 178.7 405 35.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.8e-40 169.9 361 40.7
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 5.2e-33 146.7 281 35.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.8e-32 143.3 528 29.2
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 6.4e-31 139.8 116 56.0
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.3e-31 139.4 282 36.9
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.5e-27 128.6 299 31.1
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 1.9e-27 128.3 157 43.9
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 3.3e-27 127.5 80 71.2
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 7.3e-27 126.3 124 50.0
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.3e-20 105.5 100 59.0
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.5e-19 101.3 76 56.6
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.8e-18 97.8 130 46.9
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-16 91.7 452 27.2
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.9e-15 87.0 131 35.9
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.4e-14 85.5 286 28.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 1.4e-14 85.5 157 33.1
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 7.8e-13 79.7 320 26.9
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-12 79.3 316 31.0
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.4e-08 63.9 122 35.2
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.2e-06 57.8 160 33.8


User provided reference genes

Program Settings