Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.8e-134 481.5 237 100.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 7.0e-56 221.5 193 60.1
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 9.1e-56 221.1 193 59.1
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 1.3e-54 217.2 193 59.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.0e-54 215.3 210 54.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.9e-53 213.4 181 60.8
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.2e-53 211.5 192 58.9
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 9.5e-53 211.1 193 59.1
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.2e-52 210.7 177 60.5
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.6e-52 210.3 195 59.5
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.1e-52 209.9 192 57.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.1e-52 209.9 193 58.0
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.1e-52 209.9 181 60.2
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.8e-52 209.5 239 48.1
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 6.1e-52 208.4 183 59.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.0e-51 207.6 195 59.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.0e-51 207.6 194 57.7
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.4e-51 207.2 179 59.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 3.0e-51 206.1 190 57.9
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 4.0e-51 205.7 180 60.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.2e-51 205.3 196 57.7
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 6.8e-51 204.9 183 58.5
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 8.9e-51 204.5 183 56.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 8.9e-51 204.5 185 57.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-50 204.1 202 54.0
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.0e-50 203.4 183 59.6
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 2.6e-50 203.0 182 59.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 2.6e-50 203.0 182 56.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 3.4e-50 202.6 181 58.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 4.4e-50 202.2 191 55.5
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 5.7e-50 201.8 178 60.1
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 5.7e-50 201.8 193 56.0
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.7e-50 201.8 193 55.4
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 7.5e-50 201.4 183 56.3
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.5e-50 201.4 194 58.2
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 9.8e-50 201.1 182 57.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.8e-50 201.1 183 57.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 9.8e-50 201.1 189 55.0
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 9.8e-50 201.1 183 56.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 1.7e-49 200.3 183 56.3
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-49 200.3 179 57.5
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-49 200.3 179 57.5
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.2e-49 199.9 183 57.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.2e-49 199.9 182 57.7
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.9e-49 198.7 191 57.1
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.9e-49 198.7 191 57.1
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 6.3e-49 198.4 178 59.6
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.3e-49 198.4 194 55.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 6.3e-49 198.4 183 59.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 6.3e-49 198.4 181 58.6
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 8.3e-49 198.0 178 59.6
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.3e-49 198.0 179 57.0
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 8.3e-49 198.0 179 57.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 8.3e-49 198.0 181 56.9
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 8.3e-49 198.0 191 56.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 8.3e-49 198.0 182 57.1
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.1e-48 197.6 183 56.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.1e-48 197.6 182 56.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-48 197.6 179 57.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.1e-48 197.6 195 55.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.1e-48 197.6 183 57.9
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.4e-48 197.2 180 56.7
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.4e-48 197.2 181 56.9
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.8e-48 196.8 179 57.0
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.8e-48 196.8 194 55.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.8e-48 196.8 178 57.3
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.4e-48 196.4 189 54.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.1e-48 195.7 188 54.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-48 195.7 178 59.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.1e-48 195.7 178 59.0
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.1e-48 195.7 194 55.7
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 5.4e-48 195.3 188 55.3
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.4e-48 195.3 185 58.9
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 5.4e-48 195.3 179 58.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 7.0e-48 194.9 188 54.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 7.0e-48 194.9 181 56.9
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 7.0e-48 194.9 181 56.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 7.0e-48 194.9 183 57.4
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 7.0e-48 194.9 181 57.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 9.2e-48 194.5 178 58.4
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-47 193.7 181 56.9
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.0e-47 193.4 179 58.1
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.0e-47 193.4 183 56.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 2.7e-47 193.0 193 55.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 2.7e-47 193.0 184 56.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.7e-47 193.0 183 57.4
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 4.5e-47 192.2 183 58.5
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 4.5e-47 192.2 196 55.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 7.8e-47 191.4 180 57.8
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.0e-46 191.0 179 57.5
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.3e-46 190.7 202 51.0
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.3e-46 190.7 194 53.6
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.7e-46 190.3 183 57.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.7e-46 190.3 186 53.2
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.7e-46 190.3 186 53.2
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.3e-46 189.9 182 56.0
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.3e-46 189.9 190 53.7
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.0e-46 188.7 178 56.7
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 5.0e-46 188.7 183 55.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 6.6e-46 188.3 180 54.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.6e-46 188.3 178 55.1
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.6e-46 188.3 194 54.1
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 6.6e-46 188.3 193 56.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.1e-45 187.6 182 54.9
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.3e-45 185.7 190 53.2
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 7.3e-45 184.9 191 52.9
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 9.5e-45 184.5 183 55.7
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 6.1e-44 181.8 180 52.2
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 6.1e-44 181.8 182 53.3
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-43 181.0 205 50.2
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-43 181.0 205 50.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 6.8e-43 178.3 196 54.1
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.8e-43 178.3 199 52.8
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 8.9e-43 177.9 188 51.1
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.2e-42 177.6 185 51.9
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.2e-42 177.6 195 52.8
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 9.8e-42 174.5 188 51.1
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 2.9e-41 172.9 188 51.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.9e-40 170.2 135 64.4
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.2e-40 169.5 183 50.8
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.7e-39 166.4 183 49.7
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.7e-39 166.4 127 67.7
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 6.0e-39 165.2 183 51.4
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-38 164.5 222 45.0
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 1.9e-37 160.2 188 47.9
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.1e-35 154.5 185 48.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-35 153.7 193 48.7
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.1e-32 144.4 134 54.5
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 3.2e-32 142.9 117 62.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.5e-31 139.4 120 60.0
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.0e-30 136.3 142 52.8
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 2.3e-27 126.7 114 56.1
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 2.3e-27 126.7 114 56.1
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.5e-26 124.0 133 44.4
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 7.6e-26 121.7 177 44.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-25 120.9 181 44.8
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.4e-24 117.5 175 44.0
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 9.2e-24 114.8 121 49.6
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.8e-23 111.7 134 41.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-21 107.5 91 63.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-21 107.5 91 63.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.8e-20 103.2 96 57.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.0e-18 97.1 60 71.7
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 5.8e-18 95.5 116 48.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.5e-15 86.3 60 63.3
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 4.4e-10 69.3 80 53.8
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.2e-08 63.2 44 72.7
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 7.1e-08 62.0 40 77.5
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.1e-08 62.0 85 48.2
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 9.3e-08 61.6 118 36.4
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 3.5e-07 59.7 52 61.5
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.0e-06 58.2 46 54.3
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.3e-06 57.0 157 28.7


User provided reference genes

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