Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 6.8e-109 397.9 297 100.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 7.7e-28 128.6 164 70.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 4.4e-15 86.3 47 83.0
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.2e-14 84.0 75 58.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.2e-14 84.0 75 58.7
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.9e-13 80.9 47 80.9
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.2e-13 80.1 74 56.8
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 3.2e-13 80.1 44 81.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 5.4e-13 79.3 46 80.4
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 7.0e-13 79.0 45 80.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.2e-13 78.6 43 83.7
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 1.6e-12 77.8 41 85.4
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 2.0e-12 77.4 42 83.3
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 2.7e-12 77.0 48 75.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.7e-12 77.0 40 85.0
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.7e-12 77.0 40 85.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.7e-12 77.0 42 83.3
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 3.5e-12 76.6 46 78.3
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.5e-12 76.6 42 85.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.6e-12 76.3 41 82.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 4.6e-12 76.3 42 85.7
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 6.0e-12 75.9 41 80.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 7.8e-12 75.5 51 74.5
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 7.8e-12 75.5 43 81.4
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 7.8e-12 75.5 46 73.9
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.0e-11 75.1 41 85.4
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.3e-11 74.7 41 80.5
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 1.3e-11 74.7 42 83.3
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.3e-11 74.7 46 76.1
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.3e-11 74.7 47 76.6
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.7e-11 74.3 42 81.0
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.7e-11 74.3 42 81.0
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.3e-11 73.9 41 80.5
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.3e-11 73.9 41 82.9
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 3.0e-11 73.6 47 78.7
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 3.0e-11 73.6 41 80.5
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 3.9e-11 73.2 73 52.1
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.0e-11 72.8 57 63.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.0e-11 72.8 44 79.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 5.0e-11 72.8 47 78.7
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.0e-11 72.8 42 81.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.0e-11 72.8 42 81.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.0e-11 72.8 42 81.0
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 5.0e-11 72.8 77 50.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 8.6e-11 72.0 41 82.9
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.1e-10 71.6 42 78.6
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.1e-10 71.6 48 75.0
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.1e-10 71.6 47 74.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.5e-10 71.2 38 84.2
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.5e-10 71.2 41 78.0
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 1.5e-10 71.2 58 56.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.9e-10 70.9 36 88.9
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.9e-10 70.9 79 53.2
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.9e-10 70.9 41 80.5
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.5e-10 70.5 51 66.7
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.5e-10 70.5 39 84.6
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.5e-10 70.5 47 74.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 2.5e-10 70.5 47 74.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 2.5e-10 70.5 44 72.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.3e-10 70.1 42 78.6
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 3.3e-10 70.1 51 66.7
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 3.3e-10 70.1 51 66.7
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 3.3e-10 70.1 51 66.7
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.3e-10 70.1 44 79.5
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 4.3e-10 69.7 41 78.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 4.3e-10 69.7 47 72.3
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 5.6e-10 69.3 41 75.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.6e-10 69.3 41 75.6
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 7.3e-10 68.9 38 78.9
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.3e-10 68.9 45 77.8
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 7.3e-10 68.9 44 77.3
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.3e-10 68.9 39 84.6
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 1.2e-09 68.2 72 52.8
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 64.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 64.7
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 62.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 64.7
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 64.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 1.2e-09 68.2 51 64.7
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-09 68.2 42 73.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.6e-09 67.8 42 73.8
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.1e-09 67.4 38 78.9
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.8e-09 67.0 49 65.3
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.8e-09 67.0 49 65.3
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.8e-09 67.0 47 74.5
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.8e-09 67.0 38 76.3
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 2.8e-09 67.0 47 72.3
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.2e-09 65.9 45 75.6
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.2e-09 65.9 40 75.0
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 8.0e-09 65.5 48 66.7
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.1e-08 65.1 41 73.2
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.4e-08 64.7 47 72.3
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.4e-08 64.7 47 72.3
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.4e-08 64.7 39 76.9
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.8e-08 64.3 42 73.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-08 63.5 47 72.3
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 6.8e-08 62.4 47 63.8
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 8.9e-08 62.0 33 84.8
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 1.2e-07 61.6 41 68.3
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 2.0e-07 60.8 47 61.7
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.0e-07 60.8 57 59.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 2.0e-07 60.8 47 63.8
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.4e-07 60.1 53 52.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.4e-07 60.1 41 65.9
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 4.4e-07 59.7 50 64.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 5.8e-07 59.3 46 65.2
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 7.5e-07 58.9 34 76.5
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.8e-07 58.5 47 51.1
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 9.8e-07 58.5 47 51.1
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.7e-06 57.8 31 77.4
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.2e-06 57.4 47 59.6
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.2e-06 57.4 47 59.6
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.9e-06 57.0 41 63.4
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.7e-06 56.6 36 72.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 6.4e-06 55.8 30 76.7
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.4e-06 55.8 30 76.7
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 6.4e-06 55.8 40 67.5


User provided reference genes

Program Settings