Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_699.g19126 Utricularia gibba HOM05D002542 ORTHO05D005078 6.0e-55 217.2 108 100.0
Dinv08045 Davidia involucrata HOM05D002542 ORTHO05D005078 2.1e-23 112.5 137 46.0
Cc01_g04390 Coffea canephora HOM05D002542 ORTHO05D005078 7.9e-23 110.5 145 45.5
MSTRG.17576 Avicennia marina HOM05D002542 ORTHO05D005078 1.0e-22 110.2 134 46.3
unitig_22.g6208 Utricularia gibba HOM05D002542 ORTHO05D005078 1.0e-22 110.2 142 46.5
arahy.Tifrunner.gnm1.ann1.EPQ3BP Arachis hypogaea HOM05D002542 ORTHO05D005078 8.8e-22 107.1 129 48.1
Psat0s3083g0120 Pisum sativum HOM05D002542 ORTHO05D005078 1.1e-21 106.7 134 46.3
Potri.003G207600 Populus trichocarpa HOM05D002542 ORTHO05D005078 1.1e-21 106.7 141 44.7
arahy.Tifrunner.gnm1.ann1.SMM6ZV Arachis hypogaea HOM05D002542 ORTHO05D005078 1.5e-21 106.3 129 47.3
HanXRQChr13g0404001 Helianthus annuus HOM05D002542 ORTHO05D005078 2.0e-21 105.9 127 47.2
Haze_23066 Corylus avellana HOM05D002542 ORTHO05D005078 2.6e-21 105.5 144 44.4
TWI32G0526 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 2.6e-21 105.5 144 43.8
CiPaw.13G164700 Carya illinoinensis HOM05D002542 ORTHO05D005078 4.4e-21 104.8 141 41.8
SGA_v2.0_scaffold3G01539 Striga asiatica HOM05D002542 ORTHO05D005078 4.4e-21 104.8 104 54.8
Cfa009716 Carpinus fangiana HOM05D002542 ORTHO05D005078 5.7e-21 104.4 144 42.4
Haze_23069 Corylus avellana HOM05D002542 ORTHO05D005078 5.7e-21 104.4 144 43.8
TWI34G0903 Tripterygium wilfordii HOM05D002542 ORTHO05D005078 5.7e-21 104.4 144 41.7
Glyma.13G341900 Glycine max HOM05D002542 ORTHO05D005078 9.7e-21 103.6 142 43.7
Lalb_Chr14g0372211 Lupinus albus HOM05D002542 ORTHO05D005078 9.7e-21 103.6 146 43.8
Medtr4g065980 Medicago truncatula HOM05D002542 ORTHO05D005078 9.7e-21 103.6 147 41.5
Aqoxy1G00203 Aquilegia oxysepala HOM05D002542 ORTHO05D005078 1.3e-20 103.2 131 45.8
Lsat_1_v5_gn_6_48640 Lactuca sativa HOM05D002542 ORTHO05D005078 1.3e-20 103.2 133 44.4
Peaxi162Scf00839g00235 Petunia axillaris HOM05D002542 ORTHO05D005078 1.3e-20 103.2 148 39.9
Sopen11g023360 Solanum pennellii HOM05D002542 ORTHO05D005078 1.3e-20 103.2 146 43.8
Ciclev10015048m.g Citrus clementina HOM05D002542 ORTHO05D005078 1.7e-20 102.8 143 44.1
FAN25G0516 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.7e-20 102.8 137 44.5
Nitab4.5_0000175g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 1.7e-20 102.8 145 40.0
Oeu055812.1 Olea europaea HOM05D002542 ORTHO05D005078 1.7e-20 102.8 144 42.4
QL11p056581 Quercus lobata HOM05D002542 ORTHO05D005078 1.7e-20 102.8 144 41.0
GSVIVG01025315001 Vitis vinifera HOM05D002542 ORTHO05D005078 1.7e-20 102.8 145 43.4
MBI01_g36438_MAGBIO Magnolia biondii HOM05D002542 ORTHO05D005078 2.2e-20 102.4 129 44.2
Psat5g288320 Pisum sativum HOM05D002542 ORTHO05D005078 2.2e-20 102.4 146 42.5
FAN16G1676 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.8e-20 102.1 140 43.6
Lj3g0023719 Lotus japonicus HOM05D002542 ORTHO05D005078 2.8e-20 102.1 141 45.4
Nitab4.5_0002278g0060 Nicotiana tabacum HOM05D002542 ORTHO05D005078 2.8e-20 102.1 151 41.1
arahy.Tifrunner.gnm1.ann1.YJX7RI Arachis hypogaea HOM05D002542 ORTHO05D005078 3.7e-20 101.7 120 45.8
Dinv36293 Davidia involucrata HOM05D002542 ORTHO05D005078 3.7e-20 101.7 80 56.2
Solyc11g056620.3 Solanum lycopersicum HOM05D002542 ORTHO05D005078 3.7e-20 101.7 146 42.5
vmacro04178 Vaccinium macrocarpon HOM05D002542 ORTHO05D005078 3.7e-20 101.7 141 42.6
CSS0032394 Camellia sinensis var. sinensis HOM05D002542 ORTHO05D005078 4.8e-20 101.3 80 57.5
Glyma.15G032400 Glycine max HOM05D002542 ORTHO05D005078 4.8e-20 101.3 146 41.8
Hma1.2p1_0728F.1_g209330 Hydrangea macrophylla HOM05D002542 ORTHO05D005078 4.8e-20 101.3 140 42.1
Lj3g0008300 Lotus japonicus HOM05D002542 ORTHO05D005078 4.8e-20 101.3 143 42.7
Migut.D00566 Erythranthe guttata HOM05D002542 ORTHO05D005078 6.3e-20 100.9 87 57.5
Medtr2g098340 Medicago truncatula HOM05D002542 ORTHO05D005078 6.3e-20 100.9 146 41.8
arahy.Tifrunner.gnm1.ann1.R03J4Q Arachis hypogaea HOM05D002542 ORTHO05D005078 8.2e-20 100.5 120 45.0
QL01p005723 Quercus lobata HOM05D002542 ORTHO05D005078 8.2e-20 100.5 144 43.1
Lalb_Chr03g0026231 Lupinus albus HOM05D002542 ORTHO05D005078 1.1e-19 100.1 144 43.1
Phvul.L011143 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 1.1e-19 100.1 146 41.1
Ca_01278_v3 Cicer arietinum L. HOM05D002542 ORTHO05D005078 1.4e-19 99.8 146 41.8
FvH4_3g43310 Fragaria vesca HOM05D002542 ORTHO05D005078 1.4e-19 99.8 139 43.9
CiPaw.14G122700 Carya illinoinensis HOM05D002542 ORTHO05D005078 1.8e-19 99.4 143 39.9
MD11G1027800 Malus domestica HOM05D002542 ORTHO05D005078 1.8e-19 99.4 149 40.9
Prupe.6G021800 Prunus persica HOM05D002542 ORTHO05D005078 1.8e-19 99.4 150 40.0
TPR.G6841 Trifolium pratense HOM05D002542 ORTHO05D005078 1.8e-19 99.4 146 41.8
Duzib170G1079 Durio zibethinus HOM05D002542 ORTHO05D005078 2.4e-19 99.0 142 42.3
Duzib168G0207 Durio zibethinus HOM05D002542 ORTHO05D005078 3.1e-19 98.6 141 41.8
ECA233G4099 Erigeron canadensis HOM05D002542 ORTHO05D005078 3.1e-19 98.6 138 42.0
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 3.1e-19 98.6 138 42.8
Manes.06G167900 Manihot esculenta HOM05D002542 ORTHO05D005078 3.1e-19 98.6 144 41.0
Nn7g36091 Nelumbo nucifera HOM05D002542 ORTHO05D005078 3.1e-19 98.6 140 41.4
PSO339G0387 Papaver somniferum HOM05D002542 ORTHO05D005078 3.1e-19 98.6 143 43.4
Thecc.09G226200 Theobroma cacao HOM05D002542 ORTHO05D005078 3.1e-19 98.6 141 41.8
Lj2A649G45 Lonicera japonica HOM05D002542 ORTHO05D005078 4.1e-19 98.2 63 66.7
TPR.G13667 Trifolium pratense HOM05D002542 ORTHO05D005078 4.1e-19 98.2 148 41.2
Eucgr.J00798 Eucalyptus grandis HOM05D002542 ORTHO05D005078 5.3e-19 97.8 145 37.2
PSO384G3896 Papaver somniferum HOM05D002542 ORTHO05D005078 5.3e-19 97.8 143 43.4
CANSAT56G4386 Cannabis sativa HOM05D002542 ORTHO05D005078 6.9e-19 97.4 150 41.3
Cpa.g.sc84.91 Carica papaya HOM05D002542 ORTHO05D005078 6.9e-19 97.4 148 40.5
Ca_20579_v3 Cicer arietinum L. HOM05D002542 ORTHO05D005078 6.9e-19 97.4 144 41.0
DCAR_023758 Daucus carota HOM05D002542 ORTHO05D005078 6.9e-19 97.4 121 48.8
Sabra01G0011900 Salix brachista HOM05D002542 ORTHO05D005078 6.9e-19 97.4 67 64.2
SalBow4G1692 Salvia bowleyana HOM05D002542 ORTHO05D005078 6.9e-19 97.4 87 54.0
SalBow4G1723 Salvia bowleyana HOM05D002542 ORTHO05D005078 6.9e-19 97.4 87 54.0
Atru.chr3.2552 Acer truncatum HOM05D002542 ORTHO05D005078 9.1e-19 97.1 143 39.9
DCAR_002044 Daucus carota HOM05D002542 ORTHO05D005078 9.1e-19 97.1 80 58.8
RcHm_v2.0_Chr5g0077371 Rosa chinensis HOM05D002542 ORTHO05D005078 9.1e-19 97.1 146 41.1
Zm00001eb252800 Zea mays HOM05D002542 ORTHO05D005078 9.1e-19 97.1 137 44.5
ClCG02G023450 Citrullus lanatus HOM05D002542 ORTHO05D005078 1.5e-18 96.3 150 40.0
Sabra03G0153100 Salix brachista HOM05D002542 ORTHO05D005078 1.5e-18 96.3 67 64.2
VMungo1080G0873 Vigna mungo HOM05D002542 ORTHO05D005078 1.5e-18 96.3 142 42.3
SGA_v2.0_scaffold1G00812 Striga asiatica HOM05D002542 ORTHO05D005078 2.0e-18 95.9 132 40.9
Migut.N02300 Erythranthe guttata HOM05D002542 ORTHO05D005078 4.5e-18 94.7 72 58.3
Gorai.006G129500 Gossypium raimondii HOM05D002542 ORTHO05D005078 5.9e-18 94.4 141 41.8
PGR102G1632 Punica granatum HOM05D002542 ORTHO05D005078 5.9e-18 94.4 122 41.8
MELO3C014617.2 Cucumis melo HOM05D002542 ORTHO05D005078 7.7e-18 94.0 70 64.3
CsaV3_4G024050 Cucumis sativus L. HOM05D002542 ORTHO05D005078 1.0e-17 93.6 62 66.1
Migut.N01889 Erythranthe guttata HOM05D002542 ORTHO05D005078 1.0e-17 93.6 86 57.0
Glyma.11G131000 Glycine max HOM05D002542 ORTHO05D005078 1.3e-17 93.2 142 42.3
Os09g0488700 Oryza sativa ssp. japonica HOM05D002542 ORTHO05D005078 1.3e-17 93.2 122 45.1
Rhsim13G0224600 Rhododendron simsii HOM05D002542 ORTHO05D005078 1.3e-17 93.2 142 40.8
CAN.G704.1 Capsicum annuum HOM05D002542 ORTHO05D005078 2.2e-17 92.4 108 50.9
Duzib150G1060 Durio zibethinus HOM05D002542 ORTHO05D005078 2.9e-17 92.0 141 39.7
Gorai.001G140400 Gossypium raimondii HOM05D002542 ORTHO05D005078 2.9e-17 92.0 144 40.3
PGR119G0847 Punica granatum HOM05D002542 ORTHO05D005078 2.9e-17 92.0 141 41.1
COL.COLO4_24828 Corchorus olitorius HOM05D002542 ORTHO05D005078 3.8e-17 91.7 148 38.5
Nn2g15512 Nelumbo nucifera HOM05D002542 ORTHO05D005078 3.8e-17 91.7 145 40.7
Potri.001G017000 Populus trichocarpa HOM05D002542 ORTHO05D005078 5.0e-17 91.3 68 58.8
Sed0011721 Sechium edule HOM05D002542 ORTHO05D005078 5.0e-17 91.3 62 62.9
AUR62019257 Chenopodium quinoa HOM05D002542 ORTHO05D005078 6.5e-17 90.9 144 39.6
AUR62043579 Chenopodium quinoa HOM05D002542 ORTHO05D005078 6.5e-17 90.9 144 39.6
Glyma.12G055300 Glycine max HOM05D002542 ORTHO05D005078 6.5e-17 90.9 62 64.5
THA.LOC104799095 Tarenaya hassleriana HOM05D002542 ORTHO05D005078 6.5e-17 90.9 59 69.5
TAR369G0468 Trochodendron aralioides HOM05D002542 ORTHO05D005078 6.5e-17 90.9 62 64.5
TAR636G0047 Trochodendron aralioides HOM05D002542 ORTHO05D005078 6.5e-17 90.9 66 62.1
CDE05G2289 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 8.5e-17 90.5 62 67.7
VMungo1127G1966 Vigna mungo HOM05D002542 ORTHO05D005078 8.5e-17 90.5 68 61.8
Gohir.A09G115100 Gossypium hirsutum HOM05D002542 ORTHO05D005078 1.1e-16 90.1 77 57.1
Aa31LG9G10410 Aethionema arabicum HOM05D002542 ORTHO05D005078 1.4e-16 89.7 67 64.2
EL10Ac4g10309 Beta vulgaris HOM05D002542 ORTHO05D005078 1.4e-16 89.7 141 38.3
Carub.0006s3119 Capsella rubella HOM05D002542 ORTHO05D005078 1.4e-16 89.7 59 67.8
DCAR_029941 Daucus carota HOM05D002542 ORTHO05D005078 1.4e-16 89.7 60 63.3
SEGI_41426 Sequoiadendron giganteum HOM05D002542 ORTHO05D005078 1.4e-16 89.7 86 52.3
CARHR254160 Cardamine hirsuta HOM05D002542 ORTHO05D005078 1.9e-16 89.4 59 67.8
AUR62000085 Chenopodium quinoa HOM05D002542 ORTHO05D005078 1.9e-16 89.4 137 40.1
Os02g0717600 Oryza sativa ssp. japonica HOM05D002542 ORTHO05D005078 1.9e-16 89.4 70 60.0
C02p41260 Brassica napus HOM05D002542 ORTHO05D005078 2.5e-16 89.0 82 56.1
Gohir.D09G111700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 2.5e-16 89.0 59 66.1
Zm00001eb097340 Zea mays HOM05D002542 ORTHO05D005078 2.5e-16 89.0 120 45.0
BcaB05g23771 Brassica carinata HOM05D002542 ORTHO05D005078 3.2e-16 88.6 59 67.8
BcaC03g16313 Brassica carinata HOM05D002542 ORTHO05D005078 3.2e-16 88.6 59 67.8
A02p25930 Brassica napus HOM05D002542 ORTHO05D005078 3.2e-16 88.6 59 67.8
BolC2t10148H Brassica oleracea HOM05D002542 ORTHO05D005078 3.2e-16 88.6 59 67.8
BraA02t07588Z Brassica rapa HOM05D002542 ORTHO05D005078 3.2e-16 88.6 59 67.8
ATR0605G168 Amborella trichopoda HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 67.8
BcaB01g01717 Brassica carinata HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 66.1
A09p27050 Brassica napus HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 66.1
BraA09t38276Z Brassica rapa HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 66.1
Thhalv10028621m.g Eutrema salsugineum HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 66.1
Phvul.011G057300 Phaseolus vulgaris HOM05D002542 ORTHO05D005078 4.2e-16 88.2 59 64.4
TAR623G0073 Trochodendron aralioides HOM05D002542 ORTHO05D005078 4.2e-16 88.2 149 37.6
AL6G46900 Arabidopsis lyrata HOM05D002542 ORTHO05D005078 5.5e-16 87.8 59 67.8
AT4G12070 Arabidopsis thaliana HOM05D002542 ORTHO05D005078 5.5e-16 87.8 59 67.8
TAR623G0292 Trochodendron aralioides HOM05D002542 ORTHO05D005078 5.5e-16 87.8 62 62.9
BcaC04g21201 Brassica carinata HOM05D002542 ORTHO05D005078 7.2e-16 87.4 59 66.1
C09p34380 Brassica napus HOM05D002542 ORTHO05D005078 7.2e-16 87.4 59 66.1
BolC9t56280H Brassica oleracea HOM05D002542 ORTHO05D005078 7.2e-16 87.4 59 66.1
Gohir.A07G125700 Gossypium hirsutum HOM05D002542 ORTHO05D005078 9.4e-16 87.0 59 64.4
Sp6g05430 Schrenkiella parvula HOM05D002542 ORTHO05D005078 9.4e-16 87.0 102 46.1
Zm00001eb316700 Zea mays HOM05D002542 ORTHO05D005078 1.6e-15 86.3 60 63.3
Os09g0281800 Oryza sativa ssp. japonica HOM05D002542 ORTHO05D005078 4.7e-15 84.7 62 62.9
Thecc.03G111400 Theobroma cacao HOM05D002542 ORTHO05D005078 8.0e-15 84.0 57 63.2
Os10g0370100 Oryza sativa ssp. japonica HOM05D002542 ORTHO05D014245 1.0e-14 83.6 60 65.0
Ah.06g193550 Amaranthus hybridus HOM05D002542 ORTHO05D005078 1.8e-14 82.8 135 37.8
Os08g0333100 Oryza sativa ssp. japonica HOM05D002542 ORTHO05D005078 1.8e-14 82.8 75 54.7
AUR62043684 Chenopodium quinoa HOM05D002542 ORTHO05D005078 3.0e-14 82.0 59 61.0
arahy.Tifrunner.gnm1.ann1.WK1WTY Arachis hypogaea HOM05D002542 ORTHO05D005078 2.6e-13 79.0 58 62.1
SMO364G0253 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 8.2e-12 73.9 68 52.9
CDE05G1246 Ceratophyllum demersum HOM05D002542 ORTHO05D005078 1.1e-11 73.6 80 50.0
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 1.1e-11 73.6 84 47.6
FAN11G0783 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.4e-11 73.2 118 40.7
Pp3c14_20320 Physcomitrium patens HOM05D002542 ORTHO05D005078 1.8e-11 72.8 59 52.5
Pp3c1_29260 Physcomitrium patens HOM05D002542 ORTHO05D005078 1.8e-11 72.8 59 54.2
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 1.8e-11 72.8 84 47.6
Pp3c17_18410 Physcomitrium patens HOM05D002542 ORTHO05D005078 2.4e-11 72.4 59 52.5
Pp3c2_13140 Physcomitrium patens HOM05D002542 ORTHO05D005078 4.1e-11 71.6 59 50.8
Actinidia16302 Actinidia chinensis HOM05D002542 ORTHO05D005078 9.1e-11 70.5 148 35.8
AagrBONN_evm.TU.Sc2ySwM_117.718 Anthoceros agrestis HOM05D002542 ORTHO05D005078 7.7e-10 67.4 59 52.5


User provided reference genes

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