Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.3e-41 171.8 87 100.0
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.8e-15 84.7 67 68.7
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 7.1e-14 80.5 67 65.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.9e-12 74.7 78 55.1
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 5.1e-12 74.3 60 65.0
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 6.6e-12 73.9 75 58.7
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 8.7e-12 73.6 60 63.3
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.5e-11 72.0 63 55.6
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.3e-11 71.6 63 55.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.3e-11 71.2 43 76.7
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.6e-11 70.9 43 81.4
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 5.6e-11 70.9 43 81.4
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 7.3e-11 70.5 45 73.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.3e-10 69.7 43 79.1
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.3e-10 69.7 45 75.6
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.6e-10 69.3 62 58.1
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.1e-10 68.9 43 79.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 3.6e-10 68.2 58 60.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.6e-10 68.2 63 57.1
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.8e-10 67.8 43 76.7
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.8e-10 67.8 64 53.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.8e-10 67.8 64 53.1
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.8e-10 67.8 42 76.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.8e-10 67.8 42 76.2
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.2e-10 67.4 64 53.1
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 6.2e-10 67.4 44 75.0
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 8.1e-10 67.0 42 73.8
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 8.1e-10 67.0 65 56.9
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 8.1e-10 67.0 66 51.5
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.1e-09 66.6 70 50.0
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-09 66.6 62 51.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.4e-09 66.2 62 54.8
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.4e-09 66.2 41 70.7
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.8e-09 65.9 45 64.4
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-09 65.5 44 68.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.4e-09 65.5 44 68.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 3.1e-09 65.1 41 70.7
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 4.0e-09 64.7 42 73.8
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 4.0e-09 64.7 45 68.9
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 4.0e-09 64.7 43 67.4
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 4.0e-09 64.7 54 57.4
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 4.0e-09 64.7 58 51.7
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 5.3e-09 64.3 42 64.3
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 5.3e-09 64.3 43 69.8
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 5.3e-09 64.3 43 67.4
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 6.9e-09 63.9 61 55.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.9e-09 63.9 45 66.7
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 9.0e-09 63.5 44 72.7
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 9.0e-09 63.5 48 60.4
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 9.0e-09 63.5 44 70.5
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 9.0e-09 63.5 43 69.8
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-08 63.2 44 65.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.5e-08 62.8 41 65.9
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.0e-08 62.4 62 50.0
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.0e-08 62.4 42 69.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.6e-08 62.0 57 52.6
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.6e-08 62.0 59 57.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.6e-08 62.0 57 50.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.6e-08 62.0 58 50.0
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.6e-08 62.0 44 68.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 3.4e-08 61.6 56 57.1
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.4e-08 61.6 62 51.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 3.4e-08 61.6 60 53.3
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 5.8e-08 60.8 56 53.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 5.8e-08 60.8 42 66.7
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 7.6e-08 60.5 44 65.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.3e-07 59.7 60 51.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.2e-07 58.9 62 53.2
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.2e-07 58.9 62 48.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.2e-07 58.9 38 76.3
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 2.2e-07 58.9 41 63.4
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.9e-07 58.5 53 52.8
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 2.9e-07 58.5 32 87.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.9e-07 57.8 46 58.7
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 6.4e-07 57.4 45 60.0
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.4e-07 57.4 36 72.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.4e-07 57.4 45 60.0
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 8.4e-07 57.0 46 60.9
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 8.4e-07 57.0 34 73.5
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 8.4e-07 57.0 42 64.3
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.4e-06 56.2 63 47.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.4e-06 56.2 36 72.2
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.4e-06 56.2 45 57.8
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.9e-06 55.8 36 69.4
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.9e-06 55.8 33 75.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 2.4e-06 55.5 42 61.9
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 2.4e-06 55.5 42 61.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.4e-06 55.5 43 60.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.2e-06 55.1 51 54.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.2e-06 55.1 50 58.0
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.2e-06 55.1 50 58.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.4e-06 54.3 42 69.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 7.1e-06 53.9 33 75.8
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 9.3e-06 53.5 36 72.2
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 9.3e-06 53.5 35 71.4


User provided reference genes

Program Settings