Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 7.4e-288 993.4 594 100.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.8e-162 575.5 498 75.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 5.3e-161 572.0 514 71.4
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 7.6e-160 568.2 496 73.4
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 6.1e-157 558.5 511 73.2
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 8.8e-148 528.1 544 68.0
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 7.4e-147 525.0 446 77.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.7e-146 523.9 484 71.7
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.2e-146 523.5 531 67.6
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.7e-146 522.7 457 76.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 8.2e-146 521.5 562 64.4
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.3e-145 518.8 432 76.2
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 2.6e-144 516.5 461 74.6
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.2e-143 513.5 429 73.2
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 6.5e-143 511.9 502 67.1
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.9e-142 510.4 448 73.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 3.2e-142 509.6 458 68.3
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.4e-142 508.1 427 77.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.7e-141 506.5 425 77.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.6e-141 506.1 511 67.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.6e-141 506.1 458 74.2
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 7.9e-141 505.0 436 70.4
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.8e-140 503.8 460 67.2
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 5.2e-140 502.3 490 70.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.8e-140 501.5 531 63.3
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.5e-139 500.7 534 67.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 2.0e-139 500.4 473 71.2
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.0e-139 500.4 440 69.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 7.4e-139 498.4 449 73.9
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 7.4e-139 498.4 444 68.5
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 9.7e-139 498.0 439 68.8
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.8e-138 496.5 549 59.0
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 4.8e-138 495.7 429 76.9
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 8.2e-138 495.0 458 71.0
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.4e-137 493.4 430 70.2
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.1e-137 492.7 464 70.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.0e-137 491.9 461 70.3
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 7.0e-137 491.9 442 73.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 9.1e-137 491.5 468 65.0
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.6e-136 490.7 429 73.0
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.6e-136 490.7 575 57.9
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.6e-136 490.7 430 70.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.6e-136 490.7 459 66.4
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.6e-136 490.7 429 69.0
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 2.0e-136 490.3 472 69.5
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.0e-136 490.3 469 59.5
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.0e-136 490.3 433 74.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.6e-136 490.0 461 70.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.6e-136 490.0 430 70.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.6e-136 490.0 492 63.4
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 3.5e-136 489.6 462 70.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 5.9e-136 488.8 471 64.1
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 7.7e-136 488.4 447 67.8
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.9e-135 486.5 533 62.5
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 3.8e-135 486.1 476 64.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 5.0e-135 485.7 424 70.8
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.5e-135 485.3 429 73.4
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 1.1e-134 484.6 460 65.0
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-134 483.4 428 74.5
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 2.5e-134 483.4 585 53.0
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 5.5e-134 482.3 452 66.8
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 9.4e-134 481.5 434 71.4
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 9.4e-134 481.5 442 72.2
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.6e-133 480.7 544 61.4
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 2.1e-133 480.3 512 65.2
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 4.7e-133 479.2 431 66.8
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.7e-133 479.2 429 72.7
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.0e-132 478.0 429 73.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.0e-132 478.0 429 73.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-132 476.1 428 73.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 6.7e-132 475.3 439 71.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 8.8e-132 474.9 473 68.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 8.8e-132 474.9 472 68.4
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 3.3e-131 473.0 432 67.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 4.4e-131 472.6 429 71.8
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 5.7e-131 472.2 424 72.9
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.3e-130 471.1 434 72.1
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.3e-130 471.1 476 63.0
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.8e-130 469.9 439 70.6
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.8e-130 469.9 389 79.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 3.7e-130 469.5 432 66.0
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.8e-130 469.2 470 63.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 6.3e-130 468.8 429 71.6
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.1e-129 466.1 474 66.9
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 5.3e-129 465.7 522 59.0
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.1e-129 464.9 469 67.2
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.0e-128 463.8 406 69.0
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.0e-127 461.5 426 72.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.0e-127 461.5 566 59.9
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.7e-127 460.7 574 59.4
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-126 457.2 402 68.9
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.2e-126 456.4 486 65.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 7.2e-126 455.3 556 51.4
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 3.6e-125 453.0 429 71.1
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 4.7e-125 452.6 633 48.5
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.7e-125 452.6 475 65.3
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 6.1e-125 452.2 381 71.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.4e-124 451.1 458 62.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.3e-122 444.5 450 62.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 8.3e-122 441.8 418 66.0
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-121 441.0 422 71.6
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.8e-121 440.7 444 63.5
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.5e-120 436.4 428 69.9
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.5e-120 436.0 508 62.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.0e-119 434.9 433 68.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 5.5e-118 429.1 466 65.5
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 7.2e-118 428.7 355 66.8
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 8.0e-117 425.2 460 67.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 2.8e-114 416.8 502 56.2
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.6e-112 411.0 422 68.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.5e-112 409.8 461 64.2
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.9e-112 409.1 511 59.5
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-111 406.8 486 56.2
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.3e-110 402.9 424 62.3
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 9.8e-107 391.7 593 45.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.3e-106 391.3 363 78.0
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 6.4e-106 389.0 401 70.8
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.2e-104 384.8 485 57.7
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.6e-101 374.4 473 57.9
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.2e-93 348.2 358 64.2
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 5.2e-92 342.8 329 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.6e-91 340.5 409 59.4
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-87 328.6 345 69.9
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.1e-84 318.5 467 52.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.6e-83 313.9 340 58.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 1.2e-77 295.0 280 56.4
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 6.2e-77 292.7 603 42.0
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 8.4e-74 282.3 487 46.6
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.5e-72 276.9 282 76.2
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 5.1e-71 273.1 240 61.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.1e-64 251.1 382 42.7
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.6e-48 196.8 138 73.9
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.7e-47 193.0 152 61.8
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 2.4e-44 184.5 183 56.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-41 174.9 141 58.9
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.5e-41 173.3 141 58.2
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.9e-40 169.5 141 56.7
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.1e-36 156.0 168 50.6
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-33 149.1 145 50.3
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-33 149.1 145 51.7
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.4e-30 136.3 171 45.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 9.7e-30 136.0 95 75.8
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-27 129.0 128 50.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.2e-25 120.9 102 59.8
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 4.2e-25 120.6 467 25.7
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-23 115.9 73 71.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 7.4e-22 109.8 81 64.2
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.7e-18 98.6 209 34.0
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 1.9e-17 95.1 56 85.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 3.3e-14 84.3 53 73.6
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.7e-11 74.7 71 64.8
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.7e-10 72.0 52 75.0
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 1.5e-06 58.9 35 71.4
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 2.6e-06 58.2 68 50.0
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 9.8e-06 56.2 123 35.8


User provided reference genes

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