Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 4914.7 2492 100.0
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2264.2 3182 43.7
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2248.4 3199 43.0
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2174.4 3163 42.6
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2071.2 3219 40.8
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1687.5 3203 35.7
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1610.5 3204 34.7
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1572.8 3270 33.6
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1570.8 3220 33.7
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1543.5 3461 32.5
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1535.4 3213 33.5
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1530.8 3164 33.8
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1513.4 3176 33.5
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1506.5 3085 34.2
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1505.3 3077 34.5
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1504.6 3184 33.6
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1494.6 3257 32.5
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1492.6 3165 33.4
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1486.9 3116 32.9
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1481.1 3086 33.6
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1476.1 3253 32.3
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1473.0 3228 32.8
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1458.0 3226 32.3
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1455.7 3223 32.8
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1436.0 3268 31.6
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1434.9 3230 32.3
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1433.3 3102 33.6
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1431.8 3175 32.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 1423.7 2970 33.8
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1411.0 3208 32.3
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1408.3 3278 31.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1399.0 3174 32.1
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1391.3 3170 31.8
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1383.6 3232 31.3
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1378.6 3195 31.3
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1374.4 3205 31.9
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1374.4 3159 31.7
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1371.3 3219 32.4
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1360.9 3193 31.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1359.0 3151 31.6
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1357.4 3166 31.4
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1356.7 3194 31.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1330.5 3231 31.3
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1328.9 3208 31.0
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1317.0 3208 30.8
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1316.2 3179 31.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1310.0 3137 31.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1305.0 3138 31.2
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1298.1 3225 30.9
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1296.6 3155 31.0
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1293.5 1879 41.6
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1292.3 3128 31.6
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1288.5 3192 31.1
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1286.2 3836 28.4
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1269.2 3258 30.7
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1265.8 3151 30.4
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1256.9 3159 30.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1256.9 3159 30.7
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1254.6 2889 31.9
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1237.6 3154 30.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1220.7 3165 29.9
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1219.9 2844 32.0
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1211.1 1380 48.9
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1199.9 1701 42.0
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1186.8 3065 30.2
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1178.3 3171 30.3
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1140.2 3151 29.9
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1139.8 2857 30.7
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1124.4 1339 46.9
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1116.7 3288 28.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1115.1 1762 38.1
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1113.6 3133 30.1
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1104.7 3014 28.6
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1095.9 1975 36.0
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1077.0 1892 36.7
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1075.1 1437 43.6
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 2.2e-309 1067.0 1263 47.4
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 1.1e-305 1054.7 1431 41.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 1.6e-304 1050.8 3218 27.7
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 6.0e-299 1032.3 1387 43.8
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 7.4e-289 998.8 1349 42.6
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.6e-283 979.5 1313 44.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 5.1e-282 976.1 1181 46.4
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 4.8e-280 969.5 1280 43.8
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.5e-273 948.0 1470 39.0
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 1.3e-272 944.9 2819 27.8
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.1e-259 901.0 1148 45.0
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 3.9e-258 896.7 2862 27.0
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 2.3e-218 764.6 1303 37.5
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 4.0e-218 763.8 1512 34.5
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 4.7e-203 713.8 1461 34.0
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 4.9e-200 703.7 589 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 2.8e-179 634.8 1371 32.9
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.9e-178 630.2 2487 25.6
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 9.0e-178 629.8 2327 25.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 2.8e-171 608.2 1501 30.6
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.9e-159 568.9 860 39.8
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.1e-158 565.5 589 51.6
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 1.9e-151 542.3 1865 26.9
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.2e-121 443.4 1063 31.0
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.5e-121 441.4 414 56.0
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.2e-119 435.3 1069 30.3
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 8.8e-117 427.2 1077 29.7
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 2.0e-108 399.4 444 46.4
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 1.6e-105 389.8 885 32.2
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.7e-105 389.0 862 32.3
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.5e-105 388.3 1772 23.7
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.0e-104 387.1 989 30.4
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 3.1e-101 375.6 1073 29.3
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 6.0e-97 361.3 325 61.5
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 4.1e-90 338.6 941 29.3
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 5.1e-80 305.1 865 29.0
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.4e-77 297.0 1825 22.5
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.2e-74 285.8 216 64.4
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.8e-69 270.0 919 25.8
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 6.9e-69 268.1 2086 21.5
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 4.4e-68 265.4 222 63.1
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 5.4e-66 258.5 877 26.7
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 3.2e-50 206.1 186 57.0
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 6.0e-49 201.8 147 66.0
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 6.0e-49 201.8 146 66.4
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.0e-48 201.1 146 66.4
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.8e-48 200.3 235 49.8
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.2e-42 179.5 154 59.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 5.7e-39 168.7 471 28.0
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 2.7e-33 149.8 104 72.1
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 4.6e-33 149.1 673 24.1
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 1.7e-27 130.6 138 52.9
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.9e-27 129.8 170 46.5
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 8.5e-27 128.3 852 22.9
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 7.9e-25 121.7 176 40.9
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.0e-24 121.3 73 79.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 3.9e-24 119.4 178 37.1
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 9.7e-23 114.8 570 21.4
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.7e-22 114.0 576 21.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 1.8e-21 110.5 114 49.1
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.4e-21 110.2 261 29.9
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.2e-20 107.8 408 26.5
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 5.0e-19 102.4 553 23.7
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.5e-18 100.9 61 82.0
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.2e-17 97.8 258 28.7
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 8.0e-17 95.1 81 54.3
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 9.7e-15 88.2 579 23.1
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 8.2e-14 85.1 203 26.6
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 2.4e-13 83.6 160 31.2
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 1.5e-10 74.3 116 34.5
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 3.2e-10 73.2 203 23.6
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.0e-08 68.2 51 68.6
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 6.8e-08 65.5 117 35.9
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 1.5e-07 64.3 246 24.4
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.5e-07 64.3 103 34.0
VMungo0720G0368 Vigna mungo HOM05D004524 ORTHO05D051592 1.7e-06 60.8 78 35.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-06 59.3 458 21.0


User provided reference genes

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