Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 6.0e-121 437.6 227 100.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.6e-73 278.5 226 63.7
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.0e-72 277.3 228 65.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.8e-72 276.6 229 62.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 1.5e-71 273.5 227 63.4
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 3.3e-71 272.3 227 63.4
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 6.2e-70 268.1 227 62.1
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.4e-69 266.9 227 63.0
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.8e-69 266.5 226 64.2
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.3e-69 265.0 226 64.2
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.9e-69 264.6 228 61.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.0e-67 260.8 229 62.9
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.3e-67 260.4 225 58.7
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.3e-67 260.4 230 63.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.2e-67 259.6 226 61.1
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.8e-67 258.8 228 62.7
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.8e-67 258.8 226 60.6
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.1e-66 257.3 228 61.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.4e-66 256.9 231 59.7
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.4e-66 256.9 227 58.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 2.5e-66 256.1 258 55.8
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 3.2e-66 255.8 227 58.6
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 5.5e-66 255.0 227 59.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 5.5e-66 255.0 228 62.7
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 7.1e-66 254.6 226 59.7
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 7.1e-66 254.6 227 59.5
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 7.1e-66 254.6 226 58.8
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 9.3e-66 254.2 227 59.0
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.2e-65 253.8 227 59.9
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.2e-65 253.8 230 61.7
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 1.2e-65 253.8 226 57.1
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-65 253.8 226 59.3
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.7e-65 252.7 225 57.3
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.5e-65 252.3 227 60.4
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.5e-65 252.3 227 59.0
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.6e-65 251.9 226 60.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 4.6e-65 251.9 227 59.0
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 4.6e-65 251.9 226 58.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.1e-65 251.5 229 58.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.1e-65 251.5 227 60.4
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-64 250.4 226 59.3
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.3e-64 250.4 228 56.1
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 1.8e-64 250.0 226 59.7
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.8e-64 250.0 226 58.0
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 2.3e-64 249.6 255 55.3
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.1e-64 248.4 226 60.2
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 8.7e-64 247.7 227 57.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 8.7e-64 247.7 227 60.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.1e-63 247.3 226 58.8
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.1e-63 247.3 225 58.7
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.5e-63 246.9 226 60.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.5e-63 246.9 227 57.7
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.5e-63 246.1 226 58.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.5e-63 246.1 224 59.8
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.5e-63 246.1 224 59.8
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.5e-63 246.1 227 58.6
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 2.5e-63 246.1 226 56.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.3e-63 245.4 226 58.8
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.3e-63 245.4 226 58.8
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 5.7e-63 245.0 229 58.5
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 5.7e-63 245.0 227 59.5
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 5.7e-63 245.0 226 58.8
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.3e-62 243.8 231 59.7
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 1.6e-62 243.4 226 58.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.2e-62 243.0 228 60.5
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.2e-62 243.0 225 58.2
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.8e-62 242.7 261 55.6
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.7e-62 242.3 230 57.4
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.3e-62 241.5 228 59.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 6.3e-62 241.5 261 55.2
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 8.2e-62 241.1 227 56.8
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-61 240.7 228 59.2
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.8e-61 240.0 225 57.3
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.4e-61 239.6 225 57.3
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 2.4e-61 239.6 229 57.2
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 5.3e-61 238.4 228 59.2
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 6.9e-61 238.0 226 56.2
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 6.9e-61 238.0 232 55.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 6.9e-61 238.0 232 55.6
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 6.9e-61 238.0 226 58.4
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 6.9e-61 238.0 226 58.4
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 9.0e-61 237.7 224 54.0
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.2e-60 237.3 223 56.1
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.0e-60 236.5 226 57.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 3.4e-60 235.7 209 60.8
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 3.4e-60 235.7 224 53.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 3.4e-60 235.7 224 56.2
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 7.7e-60 234.6 229 56.3
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.0e-59 234.2 226 54.9
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 1.0e-59 234.2 227 52.9
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-59 234.2 226 56.6
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.3e-59 233.8 195 64.6
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.3e-59 233.8 225 55.6
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.7e-59 233.4 226 54.9
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 2.2e-59 233.0 231 58.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.9e-59 232.6 225 56.4
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.9e-59 232.6 259 51.4
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 5.0e-59 231.9 229 55.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 5.0e-59 231.9 227 55.5
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.1e-58 230.7 225 56.0
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.4e-58 230.3 226 56.2
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.9e-58 229.9 234 53.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 3.2e-58 229.2 237 53.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.5e-58 228.4 227 54.6
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.4e-58 227.6 228 53.5
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.2e-57 227.3 228 54.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.2e-57 227.3 226 54.9
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.7e-57 226.1 228 55.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 6.1e-57 224.9 226 55.3
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.0e-56 224.2 228 53.1
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-56 222.6 226 52.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 5.1e-56 221.9 224 54.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 6.7e-56 221.5 211 56.9
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.7e-54 216.9 203 55.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 3.7e-54 215.7 226 51.8
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 4.8e-54 215.3 156 69.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 9.1e-53 211.1 228 49.6
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.0e-51 207.6 170 64.1
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.0e-51 207.6 156 67.9
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.7e-51 206.8 193 58.0
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.2e-50 202.6 207 54.1
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 9.4e-50 201.1 233 49.8
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 3.5e-44 182.6 227 45.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.5e-44 182.2 228 43.9
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.0e-43 181.0 228 46.1
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 6.5e-43 178.3 229 45.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 2.5e-42 176.4 135 64.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.7e-41 172.2 238 45.4
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.0e-40 169.5 124 66.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.5e-39 167.2 169 53.8
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.0e-39 166.8 148 57.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 7.0e-37 158.3 124 60.5
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.8e-35 152.5 234 42.7
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.5e-34 150.6 237 39.7
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.3e-30 137.5 174 47.7
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 7.7e-28 128.3 128 61.7
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 6.5e-27 125.2 84 67.9
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.2e-25 120.9 121 52.9
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 8.0e-25 118.2 117 51.3
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-24 116.7 121 53.7
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-24 116.7 121 53.7
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-24 116.7 121 53.7
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 2.6e-23 113.2 176 44.3
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.6e-23 113.2 154 45.5
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 9.8e-23 111.3 142 47.9
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.3e-22 110.9 139 46.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.8e-22 109.8 141 47.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.9e-14 83.2 104 47.1
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.9e-14 83.2 103 44.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 8.3e-14 81.6 253 28.9
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 8.3e-14 81.6 198 32.8
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 3.2e-13 79.7 106 50.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 4.0e-08 62.8 59 59.3
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.2e-08 62.4 44 63.6
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.8e-08 62.0 103 40.8
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.3e-06 57.8 36 69.4


User provided reference genes

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