Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 8.7e-94 347.1 186 100.0
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 3.9e-70 268.5 179 77.7
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 3.9e-70 268.5 175 78.9
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 5.1e-70 268.1 178 76.4
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.5e-69 266.5 173 79.8
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 3.3e-69 265.4 178 75.8
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 9.7e-69 263.8 179 75.4
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 1.6e-68 263.1 179 76.5
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 8.2e-68 260.8 178 75.8
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 8.2e-68 260.8 180 75.0
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 1.1e-67 260.4 179 74.9
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.1e-67 260.4 179 74.9
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 1.1e-67 260.4 179 74.9
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 1.1e-67 260.4 178 75.8
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 1.4e-67 260.0 178 78.1
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.4e-67 260.0 181 75.1
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 2.4e-67 259.2 179 73.7
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 3.1e-67 258.8 179 74.9
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.1e-67 258.8 179 74.9
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 5.3e-67 258.1 180 75.0
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 9.0e-67 257.3 182 73.6
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.2e-66 256.9 175 76.6
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 1.2e-66 256.9 175 76.6
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 2.6e-66 255.8 183 75.4
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 2.6e-66 255.8 178 74.7
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 3.4e-66 255.4 175 76.0
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 4.5e-66 255.0 178 74.2
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 4.5e-66 255.0 179 73.2
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 4.5e-66 255.0 179 72.6
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 4.5e-66 255.0 186 71.5
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 5.9e-66 254.6 179 73.2
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 5.9e-66 254.6 179 73.2
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 1.3e-65 253.4 178 73.6
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 1.3e-65 253.4 179 75.4
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 1.7e-65 253.1 178 75.8
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.7e-65 253.1 181 72.9
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 1.7e-65 253.1 178 71.9
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 2.9e-65 252.3 176 70.5
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 5.0e-65 251.5 178 75.3
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 5.0e-65 251.5 183 71.6
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 6.5e-65 251.1 201 68.2
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 6.5e-65 251.1 177 75.1
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 8.5e-65 250.8 181 74.0
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 8.5e-65 250.8 178 73.0
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 1.1e-64 250.4 178 73.6
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 1.4e-64 250.0 182 72.5
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 1.4e-64 250.0 178 73.0
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 1.9e-64 249.6 178 74.7
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 2.5e-64 249.2 182 72.0
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 2.5e-64 249.2 178 72.5
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 1.6e-63 246.5 178 72.5
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.1e-63 246.1 186 72.0
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 2.7e-63 245.7 181 70.2
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 3.6e-63 245.4 180 72.8
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 4.6e-63 245.0 181 72.9
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 4.6e-63 245.0 176 69.3
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 6.1e-63 244.6 181 72.4
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 7.9e-63 244.2 178 71.3
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 7.9e-63 244.2 179 71.5
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 1.0e-62 243.8 178 71.9
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.4e-62 243.4 179 69.8
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 1.4e-62 243.4 178 71.9
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 1.8e-62 243.0 178 71.9
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 1.8e-62 243.0 146 86.3
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 2.3e-62 242.7 178 71.3
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 2.3e-62 242.7 178 70.2
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 3.0e-62 242.3 178 71.9
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 5.1e-62 241.5 178 70.8
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 5.1e-62 241.5 178 71.3
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 5.1e-62 241.5 178 71.3
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 6.7e-62 241.1 178 70.8
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 6.7e-62 241.1 179 73.2
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 8.8e-62 240.7 178 70.8
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 1.5e-61 240.0 180 72.2
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 1.5e-61 240.0 180 72.2
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 1.5e-61 240.0 189 69.3
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 2.0e-61 239.6 180 71.1
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 3.3e-61 238.8 146 80.8
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 5.7e-61 238.0 194 66.5
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 1.3e-60 236.9 183 69.4
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 1.7e-60 236.5 178 70.2
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 1.7e-60 236.5 178 69.7
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 1.7e-60 236.5 180 68.9
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 2.2e-60 236.1 179 69.8
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 2.2e-60 236.1 179 72.1
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 2.8e-60 235.7 179 72.1
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 2.8e-60 235.7 179 69.8
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.8e-60 235.7 152 76.3
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 3.7e-60 235.3 181 69.6
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.4e-59 233.4 195 66.7
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 1.4e-59 233.4 210 61.4
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.4e-59 233.4 178 68.5
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.4e-59 232.6 196 64.8
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 9.1e-59 230.7 179 68.7
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 1.5e-58 229.9 217 58.1
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.0e-57 227.3 180 67.8
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 5.0e-57 224.9 201 61.2
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.1e-56 223.8 181 68.0
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 1.4e-56 223.4 179 67.6
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.9e-56 223.0 188 64.9
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.1e-55 219.5 156 71.8
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 6.1e-55 218.0 181 64.1
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 6.1e-55 218.0 162 71.0
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.0e-54 215.7 154 71.4
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 9.7e-53 210.7 171 65.5
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 1.3e-52 210.3 161 67.1
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 1.7e-52 209.9 155 70.3
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 1.7e-52 209.9 184 64.7
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 8.2e-52 207.6 177 61.6
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 7.0e-51 204.5 178 64.6
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 7.0e-51 204.5 146 72.6
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 9.1e-51 204.1 146 71.2
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 1.5e-50 203.4 156 66.0
CAN.G803.16 Capsicum annuum HOM05D004117 ORTHO05D004520 2.6e-50 202.6 150 71.3
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 1.0e-49 200.7 159 68.6
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 1.0e-49 200.7 178 63.5
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.3e-49 200.3 176 57.4
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 4.2e-48 195.3 156 67.3
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 4.2e-48 195.3 158 68.4
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 4.2e-48 195.3 148 67.6
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 2.3e-46 189.5 233 48.5
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 7.0e-43 177.9 134 70.1
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 9.1e-43 177.6 174 52.9
SalBow1G6942 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.2e-42 177.2 134 70.1
SalBow6G2076 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.2e-42 177.2 134 70.1
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 8.5e-41 171.0 187 49.7
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 7.2e-40 167.9 146 58.2
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 3.0e-38 162.5 108 75.0
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 1.2e-34 150.6 202 49.5
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 1.7e-33 146.7 188 53.7
SalBow1G0209 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.2e-31 140.6 98 77.6
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 1.8e-30 136.7 179 49.7
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 8.8e-30 134.4 157 53.5
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 4.4e-29 132.1 181 48.6
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 7.0e-27 124.8 179 44.1
Ciclev10014464m.g Citrus clementina HOM05D000038 ORTHO05D000423 1.0e-25 120.9 103 64.1
GSVIVG01020778001 Vitis vinifera HOM05D000038 ORTHO05D000423 1.3e-25 120.6 101 66.3
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 2.5e-24 116.3 179 44.7
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 9.5e-24 114.4 134 48.5
Lsat_1_v5_gn_3_102840 Lactuca sativa HOM05D001936 ORTHO05D004520 1.8e-22 110.2 77 74.0
Cre07.g330850 Chlamydomonas reinhardtii HOM05D004117 ORTHO05D004520 9.8e-21 104.4 157 38.9
PRCOL_00002587 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 1.6e-18 97.1 163 36.8
QL08p042731 Quercus lobata HOM05D004117 ORTHO05D004520 1.5e-16 90.5 140 45.0
Pp3c13_2890 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.5e-13 80.5 100 48.0
CBR_g22972 Chara braunii HOM05D000004 ORTHO05D000002 5.8e-13 78.6 120 38.3
Mapoly0035s0035 Marchantia polymorpha HOM05D004117 ORTHO05D256391 1.1e-11 74.3 163 31.9
PRCOL_00000399 Prasinoderma coloniale HOM05D004117 ORTHO05D004520 1.1e-11 74.3 155 32.3
arahy.Tifrunner.gnm1.ann1.K0K9CW Arachis hypogaea HOM05D012221 ORTHO05D004520 1.9e-11 73.6 65 55.4
QL08p042825 Quercus lobata HOM05D000013 ORTHO05D000689 2.3e-09 66.6 32 84.4
arahy.Tifrunner.gnm1.ann1.DYUH96 Arachis hypogaea HOM05D009422 ORTHO05D004520 3.0e-09 66.2 43 72.1
MCO15G049 Micromonas commoda HOM05D004117 ORTHO05D004520 2.1e-07 60.1 155 26.5
Aa31LG10G1600 Aethionema arabicum HOM05D000068 ORTHO05D004691 4.7e-07 58.9 152 29.6
RcHm_v2.0_Chr2g0131291 Rosa chinensis HOM05D004117 ORTHO05D004520 5.2e-06 55.5 31 74.2


User provided reference genes

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