Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 8.3e-293 1009.6 497 100.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.4e-220 769.6 477 78.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 2.5e-212 742.3 474 77.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.7e-205 719.5 474 73.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 3.8e-205 718.4 472 72.7
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.8e-205 718.4 467 73.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 4.2e-204 714.9 475 72.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.6e-203 713.0 472 72.5
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.7e-203 712.2 467 72.8
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.1e-203 711.1 472 71.6
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.4e-202 709.9 472 72.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-202 709.5 477 71.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-202 709.5 467 72.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-202 709.5 452 76.1
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.2e-201 706.8 465 73.8
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 2.6e-201 705.7 470 72.8
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.3e-200 703.4 474 71.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-200 703.4 474 73.0
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.7e-200 701.8 475 71.2
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.8e-199 699.5 485 70.3
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.8e-199 699.5 472 73.1
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 3.1e-199 698.7 469 71.9
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 7.0e-199 697.6 541 65.4
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 7.0e-199 697.6 472 73.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-198 696.8 475 71.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.2e-198 696.8 472 73.1
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.6e-198 696.4 475 72.0
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 2.0e-198 696.0 466 71.2
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.7e-198 695.7 475 71.2
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.9e-198 694.5 474 70.9
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.7e-197 693.0 475 71.2
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.2e-197 692.6 471 72.4
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.8e-197 691.8 470 70.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 3.8e-197 691.8 474 71.1
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 3.2e-196 688.7 470 70.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.2e-196 688.3 470 70.6
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 4.2e-196 688.3 472 71.4
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 5.5e-196 688.0 467 70.7
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.2e-196 687.6 465 70.8
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.4e-196 687.2 454 72.9
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.2e-195 686.8 476 69.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.6e-195 686.4 477 68.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.1e-195 686.0 472 70.6
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.7e-195 685.6 470 70.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 6.1e-195 684.5 469 70.6
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 6.1e-195 684.5 475 69.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 1.0e-194 683.7 474 71.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.3e-194 682.6 474 69.8
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 4.0e-194 681.8 473 72.1
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 5.2e-194 681.4 477 69.6
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 6.8e-194 681.0 465 70.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.0e-193 679.5 470 69.1
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 5.7e-193 677.9 466 70.8
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 5.7e-193 677.9 477 69.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.4e-191 673.3 464 70.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.1e-191 671.8 473 67.9
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 4.1e-191 671.8 475 69.3
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-190 670.2 475 69.9
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 4.5e-190 668.3 464 71.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-188 663.3 473 67.9
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.3e-188 662.1 457 70.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.3e-188 662.1 446 71.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 7.3e-188 661.0 451 70.7
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 8.0e-187 657.5 424 75.0
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.0e-186 655.6 471 67.5
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 1.5e-185 653.3 468 68.6
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 5.7e-185 651.4 466 68.9
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.5e-185 651.0 471 66.7
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.7e-184 649.8 470 68.7
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.7e-184 649.8 466 69.1
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.0e-182 642.9 468 68.4
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.0e-182 642.9 526 65.2
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 5.9e-182 641.3 463 66.3
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.5e-180 636.0 468 67.7
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.3e-180 634.4 467 67.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.0e-177 626.3 435 70.3
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 7.5e-177 624.4 472 65.0
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.3e-176 623.6 426 71.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.2e-176 622.9 502 61.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.4e-175 619.4 473 65.8
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.2e-175 617.5 469 65.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.6e-174 616.7 472 66.1
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-174 616.3 472 65.3
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 6.0e-174 614.8 472 65.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 7.8e-174 614.4 467 66.4
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 7.8e-174 614.4 469 65.2
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 3.0e-173 612.5 469 65.5
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 3.9e-173 612.1 472 65.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 3.9e-173 612.1 474 64.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 5.0e-173 611.7 470 65.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 5.0e-173 611.7 470 65.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.0e-173 611.7 466 64.8
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.0e-173 611.7 465 65.6
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.1e-172 610.5 468 65.2
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.5e-172 610.1 474 65.2
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.5e-172 609.4 470 65.7
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 9.5e-172 607.4 474 63.7
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.6e-171 606.7 472 64.6
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.8e-170 603.2 479 64.3
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 4.0e-170 602.1 470 64.3
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.1e-167 594.0 408 71.3
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.9e-167 593.2 516 57.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.1e-167 591.3 413 68.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.3e-164 582.0 471 63.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 5.2e-162 575.1 414 66.9
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 7.6e-161 571.2 444 64.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.5e-156 557.0 469 61.6
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.6e-150 537.0 491 55.4
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.1e-150 536.6 472 60.8
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 3.0e-149 532.7 366 68.9
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 3.6e-147 525.8 515 55.3
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-146 524.2 350 71.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 6.0e-142 508.4 489 54.8
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.1e-139 500.0 463 57.2
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.0e-137 493.4 360 66.7
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 2.3e-133 479.9 469 53.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.3e-132 475.7 466 51.9
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.0e-130 469.2 467 53.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 4.9e-128 462.2 546 47.4
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.5e-116 423.3 470 50.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.4e-106 390.2 270 68.1
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 9.7e-100 368.2 306 59.5
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.1e-98 362.8 325 59.7
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.5e-97 359.4 226 77.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 4.7e-94 349.4 479 42.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.3e-88 331.3 382 45.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 6.3e-83 312.4 279 61.3
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.5e-81 306.6 270 58.1
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 5.0e-80 302.8 480 36.7
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.7e-78 296.2 202 67.8
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 7.5e-68 262.3 512 35.0
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.3e-67 258.8 249 56.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.3e-64 251.5 459 38.6
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.0e-60 237.7 454 36.8
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.3e-59 235.0 272 44.5
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.5e-49 200.3 174 58.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 3.3e-47 193.7 206 50.5
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 9.5e-47 192.2 194 51.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-46 191.8 279 43.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.2e-45 186.4 111 73.9
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 8.9e-45 185.7 177 50.8
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.8e-44 183.0 111 72.1
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.8e-44 183.0 205 50.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-43 181.0 111 71.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 6.0e-41 172.9 113 72.6
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.3e-39 167.2 120 68.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.6e-36 156.0 111 64.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.3e-35 155.2 107 70.1
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 6.6e-32 142.9 92 70.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.3e-27 128.6 67 92.5
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.3e-27 128.6 118 53.4
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-26 124.4 333 30.0
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.6e-25 121.7 116 52.6
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-21 108.6 125 52.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 7.6e-20 102.8 66 72.7
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 5.6e-15 86.7 58 70.7
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 7.6e-12 76.3 49 73.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.0e-08 65.9 41 78.0
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 1.8e-08 65.1 46 56.5
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 3.0e-08 64.3 52 59.6
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 1.6e-06 58.5 37 78.4
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.7e-06 57.4 37 75.7


User provided reference genes

Program Settings