Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.3e-111 405.6 208 100.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.2e-65 251.1 205 67.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.2e-63 245.0 200 65.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 7.5e-62 241.1 205 65.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.4e-55 220.3 202 60.4
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 7.5e-54 214.5 198 57.6
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 1.7e-53 213.4 198 58.6
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.7e-53 213.4 168 66.1
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.7e-53 212.2 192 62.0
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 4.9e-53 211.8 211 60.2
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 6.4e-53 211.5 205 60.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.4e-53 211.5 205 60.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.4e-53 211.5 205 60.5
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 8.3e-53 211.1 181 63.5
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 8.3e-53 211.1 167 68.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.4e-52 209.5 201 59.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.4e-52 209.5 208 61.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.2e-52 209.1 198 59.6
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 3.2e-52 209.1 196 57.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.2e-52 209.1 183 65.0
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.1e-52 208.8 188 61.7
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.4e-52 208.4 203 58.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 5.4e-52 208.4 194 59.3
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.4e-52 208.4 206 57.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 5.4e-52 208.4 218 57.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 7.0e-52 208.0 210 57.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 9.2e-52 207.6 209 58.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-51 207.2 209 58.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.2e-51 207.2 209 57.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.2e-51 207.2 209 57.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.2e-51 207.2 170 66.5
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-51 206.8 208 61.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.0e-51 206.5 194 59.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.0e-51 206.5 189 60.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-51 206.1 209 58.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.7e-51 206.1 209 58.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.7e-51 206.1 165 67.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.7e-51 206.1 211 57.8
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 3.5e-51 205.7 209 58.4
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.5e-51 205.7 156 69.9
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.6e-51 205.3 117 84.6
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 4.6e-51 205.3 148 70.9
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 4.6e-51 205.3 148 70.9
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 4.6e-51 205.3 122 81.1
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 6.0e-51 204.9 209 57.9
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 6.0e-51 204.9 210 57.1
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 6.0e-51 204.9 207 55.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 6.0e-51 204.9 163 66.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.8e-51 204.5 148 71.6
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 7.8e-51 204.5 157 66.9
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.0e-50 204.1 207 58.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.0e-50 204.1 206 56.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.3e-50 203.8 165 67.9
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-50 203.8 196 59.7
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.3e-50 203.8 167 67.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-50 203.4 137 76.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.7e-50 203.4 209 57.4
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-50 203.4 156 68.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.7e-50 203.4 156 69.2
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.7e-50 203.4 158 69.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 1.7e-50 203.4 213 57.3
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 2.3e-50 203.0 160 68.1
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 2.3e-50 203.0 148 70.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.0e-50 202.6 148 70.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.0e-50 202.6 198 58.1
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.9e-50 202.2 165 65.5
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.9e-50 202.2 211 57.3
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.9e-50 202.2 192 61.5
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 6.6e-50 201.4 175 62.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 8.6e-50 201.1 154 67.5
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 8.6e-50 201.1 158 68.4
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 8.6e-50 201.1 117 82.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.1e-49 200.7 175 62.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.1e-49 200.7 195 60.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.9e-49 199.9 148 70.3
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-49 199.9 158 68.4
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.5e-49 199.5 117 81.2
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.5e-49 199.5 158 67.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.5e-49 199.5 194 58.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.3e-49 199.1 194 58.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.3e-49 199.1 223 56.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 3.3e-49 199.1 148 68.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.3e-49 199.1 205 54.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 3.3e-49 199.1 202 59.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.3e-49 198.7 183 60.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.3e-49 198.7 212 57.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.3e-49 198.7 194 58.2
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 5.6e-49 198.4 185 60.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 5.6e-49 198.4 191 59.2
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 7.3e-49 198.0 163 62.6
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.3e-49 198.0 115 83.5
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 7.3e-49 198.0 200 57.5
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.5e-49 197.6 152 68.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.6e-48 196.8 159 64.2
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.6e-48 196.8 152 67.8
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.8e-48 196.1 118 77.1
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.6e-48 195.7 148 67.6
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-47 194.1 195 55.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 1.1e-47 194.1 118 78.0
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.4e-47 193.7 208 54.8
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.8e-47 193.4 215 52.6
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-47 193.4 212 53.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.1e-47 192.6 157 67.5
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.8e-47 191.4 202 52.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.8e-47 191.4 211 53.6
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 9.8e-46 187.6 155 61.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.7e-45 186.8 127 74.0
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.7e-45 185.7 147 66.7
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.7e-45 185.7 127 73.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.4e-45 184.9 198 55.6
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-44 183.7 147 66.0
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-44 183.7 147 66.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.4e-44 183.7 154 61.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.4e-44 183.7 154 61.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 5.4e-44 181.8 216 50.9
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.7e-43 179.5 131 68.7
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 7.8e-43 177.9 100 87.0
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.7e-42 176.8 113 77.9
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 3.9e-42 175.6 212 48.1
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.5e-41 172.9 148 64.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.3e-41 172.6 128 67.2
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.2e-40 170.6 290 40.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.1e-40 169.9 211 49.3
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.2e-40 168.3 170 53.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 9.9e-38 161.0 165 56.4
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.5e-35 152.5 94 75.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 4.6e-35 152.1 148 57.4
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 3.9e-34 149.1 153 54.2
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.5e-33 146.4 106 63.2
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 9.5e-33 144.4 106 62.3
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.2e-32 144.1 115 58.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.1e-31 141.0 106 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 5.2e-31 138.7 106 61.3
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.2e-30 137.5 79 84.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 6.4e-29 131.7 168 49.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 2.4e-28 129.8 114 55.3
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.3e-25 118.2 67 82.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 7.3e-25 118.2 67 82.1
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 7.3e-25 118.2 211 40.3
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 6.2e-24 115.2 79 73.4
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 7.6e-14 81.6 63 61.9
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-13 80.5 50 76.0
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 8.4e-13 78.2 86 59.3
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.8e-10 70.5 64 54.7
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 9.0e-07 58.2 38 73.7


User provided reference genes

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