Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 3966.8 1991 100.0
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 0.0e+00 2794.6 2114 70.1
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 0.0e+00 2228.0 2182 55.6
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 0.0e+00 2182.5 2138 55.8
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 2137.1 2137 55.8
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 2127.1 2142 54.3
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 0.0e+00 2122.1 2046 55.5
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 0.0e+00 2106.3 2045 55.3
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1947.6 2120 51.0
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1927.1 2086 51.0
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1923.7 2199 49.2
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 0.0e+00 1915.2 2111 50.4
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 0.0e+00 1912.9 2179 49.2
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1911.3 2201 48.7
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1897.9 2205 48.9
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 0.0e+00 1896.7 2219 48.4
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 0.0e+00 1884.8 2169 48.6
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 0.0e+00 1882.1 2219 48.4
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1871.7 2095 49.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 0.0e+00 1864.7 2193 48.1
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 0.0e+00 1856.3 2228 47.1
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 0.0e+00 1851.6 2204 48.0
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1850.5 2095 49.2
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 0.0e+00 1848.2 2205 47.9
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 0.0e+00 1846.2 2204 47.7
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 0.0e+00 1843.9 2216 47.8
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 0.0e+00 1832.8 2150 48.5
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 0.0e+00 1819.3 2206 47.9
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 0.0e+00 1804.6 2204 47.1
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 0.0e+00 1801.2 2177 47.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1799.6 2095 47.9
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 0.0e+00 1785.4 2101 47.8
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 0.0e+00 1785.0 2253 46.6
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1784.2 2198 46.5
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 0.0e+00 1781.9 2230 46.1
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1780.8 2228 46.1
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 0.0e+00 1780.8 2192 45.9
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1775.4 2189 46.3
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 0.0e+00 1766.9 2187 45.6
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1766.1 2116 47.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1760.0 2234 46.0
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1756.9 2224 45.9
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1753.8 2224 45.8
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1752.3 2190 45.9
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 0.0e+00 1751.5 2087 48.4
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1750.3 1989 48.5
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 0.0e+00 1747.3 2202 45.4
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 0.0e+00 1744.9 2220 45.3
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1743.0 2068 47.8
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1743.0 2177 45.6
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 0.0e+00 1738.0 2177 45.5
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 0.0e+00 1737.2 1989 48.1
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 0.0e+00 1735.3 2228 45.4
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 0.0e+00 1734.5 2164 46.3
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 0.0e+00 1727.2 2212 45.6
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 0.0e+00 1717.6 2109 45.7
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 0.0e+00 1714.1 2124 45.4
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 0.0e+00 1712.6 2194 45.7
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 0.0e+00 1712.2 2180 46.0
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1711.8 2115 46.6
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 0.0e+00 1708.7 2266 44.6
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1703.3 2114 45.2
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1702.2 2092 46.1
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1699.9 2182 45.2
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1699.1 2195 45.5
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1698.3 2198 45.2
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1697.6 2189 45.2
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1696.4 2211 45.6
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1694.1 2171 44.5
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 0.0e+00 1692.9 2186 45.5
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1691.8 2079 46.0
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1691.4 2189 45.7
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1690.2 2085 47.0
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 0.0e+00 1690.2 2178 45.4
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 0.0e+00 1689.5 2205 44.6
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 0.0e+00 1689.1 2188 44.2
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1688.7 2176 45.4
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 0.0e+00 1679.8 2194 45.5
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1671.0 2090 45.7
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 0.0e+00 1670.6 2192 44.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1670.2 2087 46.0
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 0.0e+00 1669.1 2096 45.9
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1666.7 2190 45.2
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 0.0e+00 1662.9 2158 44.8
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 0.0e+00 1659.8 2205 43.3
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 0.0e+00 1657.9 2089 46.4
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 0.0e+00 1657.1 2210 43.3
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 0.0e+00 1645.9 2184 44.1
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1644.8 2186 44.2
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 0.0e+00 1643.2 2166 44.8
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 0.0e+00 1642.1 2029 46.8
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 0.0e+00 1635.5 2164 45.0
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 0.0e+00 1632.1 2198 43.9
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 0.0e+00 1626.3 2189 44.2
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 0.0e+00 1624.4 2078 45.7
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1620.1 2164 43.8
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 0.0e+00 1606.7 2077 45.1
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1605.9 1931 47.1
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 0.0e+00 1592.8 2077 44.5
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 0.0e+00 1590.5 2078 44.9
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1590.1 1931 46.7
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 0.0e+00 1588.9 2192 43.4
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 0.0e+00 1587.4 2204 42.4
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 0.0e+00 1578.5 1855 47.8
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 0.0e+00 1571.6 2077 44.3
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 0.0e+00 1569.7 2077 44.3
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1569.3 2096 44.2
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1565.1 2075 44.0
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1558.5 2078 44.0
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1555.4 2075 43.8
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 0.0e+00 1554.7 2159 43.6
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1548.9 2081 43.7
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1548.5 2081 43.7
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1547.7 2075 43.8
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 0.0e+00 1546.6 2194 42.1
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1537.7 2078 43.2
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 0.0e+00 1537.3 2069 43.9
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 0.0e+00 1532.3 2068 44.0
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 0.0e+00 1527.3 2061 43.9
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1525.0 2063 43.8
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 0.0e+00 1523.8 2083 43.6
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1522.3 2074 43.7
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 0.0e+00 1518.4 1821 46.2
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 0.0e+00 1510.4 2090 43.0
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1501.1 2157 42.0
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 0.0e+00 1497.6 2073 43.0
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 0.0e+00 1496.1 2159 42.1
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 0.0e+00 1478.8 1807 46.3
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 0.0e+00 1469.5 2167 42.2
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 0.0e+00 1468.0 2205 41.0
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 0.0e+00 1428.3 2144 41.0
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 0.0e+00 1392.9 1774 45.6
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 1266.9 2204 37.4
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 1266.1 1778 42.0
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 0.0e+00 1253.4 2119 38.4
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 0.0e+00 1150.6 2224 34.9
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 0.0e+00 1138.3 1750 40.1
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.5e-297 1027.3 1272 46.3
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 9.1e-290 1001.5 2262 33.1
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 7.2e-287 991.9 2147 34.2
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.3e-269 933.7 2129 32.5
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.8e-258 897.5 2239 31.4
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 4.4e-252 876.3 2116 32.2
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 5.7e-252 875.9 947 51.1
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.3e-232 810.8 1673 33.7
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 1.5e-231 808.1 867 52.4
SHI13447 Sapria himalayana HOM05D003460 ORTHO05D004277 6.9e-197 693.0 876 44.3
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 9.0e-197 692.6 1084 40.0
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 3.5e-164 584.3 1119 36.5
AagrBONN_evm.TU.Sc2ySwM_344.2570 Anthoceros agrestis HOM05D003460 ORTHO05D004277 3.4e-135 488.0 1208 30.5
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 1.0e-123 449.9 878 36.1
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 5.4e-101 374.4 2259 24.6
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 4.6e-92 344.7 643 37.9
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 5.5e-61 241.5 466 36.5
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 7.4e-50 204.5 312 42.0
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 7.2e-45 188.0 159 57.9
Psat4g169200 Pisum sativum HOM05D003460 ORTHO05D004277 4.0e-43 182.2 301 37.5
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 7.0e-40 171.4 131 63.4
TPR.G15040 Trifolium pratense HOM05D003460 ORTHO05D004277 5.9e-31 141.7 300 35.3
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.1e-29 137.5 114 63.2
Psat4g081160 Pisum sativum HOM05D001550 ORTHO05D001611 7.2e-29 134.8 301 30.6
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 1.0e-27 131.0 219 36.1
GSVIVG01026827001 Vitis vinifera HOM05D003460 ORTHO05D004277 2.3e-27 129.8 272 36.8
Haze_15504 Corylus avellana HOM05D003460 ORTHO05D004277 4.1e-24 119.0 140 46.4
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.2e-23 117.5 107 56.1
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.5e-23 115.9 364 28.8
Psat0s3269g0120 Pisum sativum HOM05D000070 ORTHO05D006683 4.5e-23 115.5 132 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 3.3e-21 109.4 147 41.5
Atru.chr5.496 Acer truncatum HOM05D003460 ORTHO05D004277 2.8e-20 106.3 104 55.8
HPP92_025393 Vanilla planifolia HOM05D003460 ORTHO05D004277 6.1e-20 105.1 127 44.9
Psat6g008040 Pisum sativum HOM05D003460 ORTHO05D019351 9.8e-18 97.8 106 51.9
Actinidia25173 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.2e-15 90.9 62 67.7
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.6e-15 90.5 72 61.1
VMungo1127G1485 Vigna mungo HOM05D003460 ORTHO05D436009 1.0e-14 87.8 71 60.6
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 1.6e-12 80.5 90 50.0
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.8e-12 79.7 58 69.0
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 1.8e-11 77.0 112 46.4
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 4.4e-10 72.4 152 34.2
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.2e-09 70.1 112 41.1
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 1.9e-08 67.0 37 73.0
CBR_g34865 Chara braunii HOM05D003460 ORTHO05D004277 3.5e-07 62.8 90 42.2
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 1.0e-06 61.2 36 69.4
VMungo1215G0982 Vigna mungo HOM05D003460 ORTHO05D004277 1.3e-06 60.8 51 54.9


User provided reference genes

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