Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 1.1e-201 706.4 348 100.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.7e-130 469.9 349 66.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 4.1e-129 465.3 348 66.4
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.2e-123 447.2 308 68.2
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 3.4e-123 445.7 344 63.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.4e-121 439.5 330 63.9
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.1e-121 439.1 337 63.2
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 5.0e-119 431.8 331 63.4
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 9.4e-118 427.6 343 62.4
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.3e-116 422.9 332 61.4
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.2e-115 420.6 333 60.4
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.5e-115 417.9 315 63.5
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 4.9e-114 415.2 337 59.6
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 4.9e-114 415.2 339 61.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 6.3e-114 414.8 312 63.5
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.1e-113 414.1 343 61.8
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 1.4e-113 413.7 331 61.3
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.1e-113 412.5 315 62.2
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.1e-113 412.5 315 62.2
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.6e-112 410.2 332 60.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.5e-112 409.1 338 58.6
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.9e-112 408.3 315 61.9
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.9e-111 406.0 347 59.1
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.9e-111 406.0 347 59.1
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.0e-111 405.2 350 58.9
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 5.0e-111 405.2 350 58.9
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 5.0e-111 405.2 333 62.2
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.0e-111 405.2 326 63.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 5.0e-111 405.2 327 59.9
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.5e-110 403.7 326 59.5
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.9e-110 403.3 331 59.5
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 5.6e-110 401.7 325 60.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 7.3e-110 401.4 345 58.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 9.5e-110 401.0 332 59.9
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.2e-109 400.6 344 58.1
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.6e-109 400.2 311 63.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.6e-109 400.2 314 61.5
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 2.1e-109 399.8 333 58.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.1e-109 399.8 332 60.5
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 2.8e-109 399.4 338 59.8
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 2.8e-109 399.4 341 57.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.6e-109 399.1 315 60.6
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.7e-109 398.7 324 61.1
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.7e-109 398.7 341 56.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 4.7e-109 398.7 307 62.9
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 6.1e-109 398.3 335 59.4
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 6.1e-109 398.3 325 60.3
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.0e-109 397.9 339 59.3
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.8e-108 396.7 333 59.2
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.0e-108 396.0 334 60.5
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 3.0e-108 396.0 342 59.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.0e-108 396.0 333 58.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.0e-108 395.6 349 57.9
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.0e-108 395.6 323 60.7
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 4.0e-108 395.6 332 59.3
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 5.2e-108 395.2 343 58.9
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 8.9e-108 394.4 324 59.6
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 4.4e-107 392.1 322 60.6
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 7.5e-107 391.3 325 60.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 7.5e-107 391.3 326 60.4
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.9e-106 389.4 325 60.0
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.9e-106 389.4 307 60.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.9e-106 389.4 318 58.2
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.7e-106 389.0 316 59.5
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 8.3e-106 387.9 325 59.7
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.1e-105 387.5 306 62.7
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.8e-105 386.7 353 57.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 2.4e-105 386.3 380 53.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.2e-105 386.0 326 59.8
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 7.0e-105 384.8 326 59.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.0e-105 384.8 312 61.2
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.0e-105 384.8 315 60.6
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 9.2e-105 384.4 318 59.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 3.5e-104 382.5 364 54.4
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.5e-104 382.5 293 62.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 2.3e-103 379.8 313 59.4
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.5e-102 377.1 344 56.4
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.5e-102 377.1 344 56.4
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 7.3e-102 374.8 270 66.7
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 6.2e-101 371.7 382 50.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 8.0e-101 371.3 323 57.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 2.3e-100 369.8 299 60.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 5.2e-100 368.6 388 51.5
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.4e-99 365.9 298 60.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 4.4e-99 365.5 272 64.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.3e-98 364.0 264 65.9
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-98 363.2 423 47.3
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 6.4e-98 361.7 334 54.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.2e-97 357.8 266 64.7
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.0e-96 355.1 267 64.8
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 7.8e-96 354.8 384 51.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 9.5e-94 347.8 311 55.6
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.1e-92 342.8 313 55.0
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.0e-92 342.4 327 52.9
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.2e-91 340.9 304 55.9
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 7.5e-91 338.2 251 65.7
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.7e-90 337.0 246 64.2
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.7e-90 337.0 307 53.4
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.9e-90 335.5 320 52.5
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-86 324.3 342 53.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.3e-86 322.4 348 52.3
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 9.5e-86 321.2 311 53.4
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-85 320.9 332 53.9
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.6e-85 319.3 317 52.1
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 4.7e-85 318.9 341 50.1
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-84 315.8 336 51.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 5.2e-84 315.5 332 51.2
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-84 315.1 328 50.0
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.2e-83 314.3 334 51.5
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.2e-82 310.1 288 54.5
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 8.4e-82 308.1 230 66.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 5.4e-81 305.4 323 51.1
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.1e-81 305.1 310 50.3
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.6e-80 303.9 206 67.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.3e-79 300.8 286 53.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.3e-79 300.1 282 55.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 3.9e-79 299.3 331 50.5
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 5.2e-76 288.9 325 50.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 9.9e-75 284.6 247 57.1
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 4.9e-74 282.3 264 54.2
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.4e-73 278.9 241 58.1
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.5e-70 270.0 419 39.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 3.3e-70 269.6 272 51.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.4e-68 264.2 311 44.1
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-66 257.3 297 44.8
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.9e-66 255.8 339 43.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.2e-64 251.1 314 43.6
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.7e-63 247.3 305 46.6
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.4e-57 226.9 153 68.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-54 216.1 243 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.0e-47 194.9 254 39.4
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 8.7e-47 191.8 203 46.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 7.4e-46 188.7 157 55.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 8.2e-45 185.3 162 56.8
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.2e-43 181.4 317 38.8
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.9e-41 174.1 339 32.7
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.2e-41 173.3 134 60.4
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 4.6e-40 169.5 245 38.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 6.1e-40 169.1 113 70.8
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.7e-38 161.8 301 31.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.2e-37 160.6 231 40.3
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 2.8e-37 160.2 248 41.9
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 4.4e-30 136.3 269 32.7
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 5.7e-30 136.0 106 61.3
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.4e-30 135.6 388 29.4
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.3e-26 124.8 304 31.6
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.9e-25 120.9 257 30.7
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.6e-24 117.9 241 32.4
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 5.2e-23 112.8 70 75.7
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 5.2e-23 112.8 70 75.7
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.1e-22 111.7 70 74.3
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.4e-20 104.8 117 39.3
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.1e-20 102.1 160 34.4
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.0e-19 100.9 122 36.9
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.9e-19 99.4 153 37.9
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 7.7e-19 99.0 245 27.3
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.2e-18 97.4 290 27.6
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.9e-17 94.4 81 55.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.4e-15 88.2 211 31.3
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 6.3e-13 79.3 60 61.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.7e-10 71.2 77 48.1


User provided reference genes

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