Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_61.g25997 Utricularia gibba HOM05D000068 ORTHO05D008806 1.5e-74 282.7 135 100.0
MSTRG.20097 Avicennia marina HOM05D000068 ORTHO05D008806 1.9e-42 176.0 131 64.1
SalBow2G0003 Salvia bowleyana HOM05D000068 ORTHO05D008806 4.3e-42 174.9 131 62.6
SalBow6G1059 Salvia bowleyana HOM05D000068 ORTHO05D008806 7.3e-42 174.1 131 62.6
SalBow6G3488 Salvia bowleyana HOM05D000068 ORTHO05D008806 7.3e-42 174.1 131 62.6
SGA_v2.0_scaffold32G13151 Striga asiatica HOM05D000068 ORTHO05D008806 1.6e-41 172.9 131 61.1
Oeu042293.1 Olea europaea HOM05D000068 ORTHO05D008806 6.8e-40 167.5 131 61.8
Migut.B00255 Erythranthe guttata HOM05D000068 ORTHO05D008806 8.9e-40 167.2 98 76.5
Ciclev10002190m.g Citrus clementina HOM05D000068 ORTHO05D008806 7.1e-37 157.5 97 73.2
Rhsim10G0134600 Rhododendron simsii HOM05D000068 ORTHO05D008806 9.2e-37 157.1 131 61.8
PSO675G5753 Papaver somniferum HOM05D000068 ORTHO05D008806 2.7e-36 155.6 125 60.8
PSO541G5701 Papaver somniferum HOM05D000068 ORTHO05D008806 6.0e-36 154.5 102 69.6
Sabra05G0052100 Salix brachista HOM05D002517 ORTHO05D003040 6.0e-36 154.5 97 69.1
HanXRQChr13g0410651 Helianthus annuus HOM05D000068 ORTHO05D008806 7.8e-36 154.1 111 60.4
Aqoxy6G00369 Aquilegia oxysepala HOM05D000068 ORTHO05D008806 1.0e-35 153.7 97 72.2
DCAR_014337 Daucus carota HOM05D000068 ORTHO05D008806 1.3e-35 153.3 99 67.7
CAN.G631.13 Capsicum annuum HOM05D000068 ORTHO05D008806 3.9e-35 151.8 122 59.0
Haze_25233 Corylus avellana HOM05D000068 ORTHO05D008806 5.1e-35 151.4 101 67.3
Nitab4.5_0010225g0030 Nicotiana tabacum HOM05D000068 ORTHO05D008806 5.1e-35 151.4 98 67.3
Aa31sc651G10 Aethionema arabicum HOM05D003596 ORTHO05D004256 6.6e-35 151.0 110 63.6
AL7G18110 Arabidopsis lyrata HOM05D000068 ORTHO05D008806 6.6e-35 151.0 111 64.0
AT4G33460 Arabidopsis thaliana HOM05D000068 ORTHO05D008806 6.6e-35 151.0 111 64.0
MD10G1016500 Malus domestica HOM05D000068 ORTHO05D008806 6.6e-35 151.0 98 68.4
THA.LOC104807155 Tarenaya hassleriana HOM05D000068 ORTHO05D008806 6.6e-35 151.0 103 66.0
Sp7g31160 Schrenkiella parvula HOM05D000068 ORTHO05D008806 8.6e-35 150.6 111 64.0
PGSC0003DMG400008062 Solanum tuberosum HOM05D000068 ORTHO05D008806 8.6e-35 150.6 98 68.4
TAR628G1100 Trochodendron aralioides HOM05D000068 ORTHO05D008806 8.6e-35 150.6 102 67.6
Prupe.8G020300 Prunus persica HOM05D000068 ORTHO05D008806 1.1e-34 150.2 98 67.3
Solyc11g069260.2 Solanum lycopersicum HOM05D000068 ORTHO05D008806 1.1e-34 150.2 98 68.4
Sopen11g027990 Solanum pennellii HOM05D000068 ORTHO05D008806 1.1e-34 150.2 98 68.4
Dinv24362 Davidia involucrata HOM05D000068 ORTHO05D008806 1.5e-34 149.8 94 71.3
Peaxi162Scf00270g01114 Petunia axillaris HOM05D000068 ORTHO05D008806 1.5e-34 149.8 101 65.3
GSVIVG01026484001 Vitis vinifera HOM05D002517 ORTHO05D003040 1.5e-34 149.8 132 59.8
Atru.chr4.896 Acer truncatum HOM05D000068 ORTHO05D008806 1.9e-34 149.4 98 68.4
EL10Ac6g15308 Beta vulgaris HOM05D000068 ORTHO05D008806 1.9e-34 149.4 97 71.1
COL.COLO4_35740 Corchorus olitorius HOM05D000068 ORTHO05D008806 1.9e-34 149.4 98 67.3
Gohir.A05G384700 Gossypium hirsutum HOM05D000068 ORTHO05D008806 1.9e-34 149.4 98 67.3
Gohir.D04G030800 Gossypium hirsutum HOM05D000068 ORTHO05D008806 1.9e-34 149.4 98 67.3
Lsat_1_v5_gn_9_89500 Lactuca sativa HOM05D000068 ORTHO05D008806 1.9e-34 149.4 111 60.4
CSS0043141 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D008806 2.5e-34 149.1 93 69.9
Potri.005G062800 Populus trichocarpa HOM05D000068 ORTHO05D008806 3.3e-34 148.7 97 68.0
Gorai.012G035000 Gossypium raimondii HOM05D000068 ORTHO05D008806 4.3e-34 148.3 98 66.3
CARHR241520 Cardamine hirsuta HOM05D000068 ORTHO05D008806 5.6e-34 147.9 127 58.3
FvH4_5g28750 Fragaria vesca HOM05D000068 ORTHO05D008806 5.6e-34 147.9 98 67.3
FAN13G1326 Fragaria x ananassa HOM05D000068 ORTHO05D008806 5.6e-34 147.9 98 67.3
FAN18G4213 Fragaria x ananassa HOM05D000068 ORTHO05D008806 5.6e-34 147.9 98 67.3
Nn5g28550 Nelumbo nucifera HOM05D000068 ORTHO05D008806 5.6e-34 147.9 94 68.1
Thecc.01G131800 Theobroma cacao HOM05D000068 ORTHO05D008806 5.6e-34 147.9 98 67.3
AUR62017876 Chenopodium quinoa HOM05D000068 ORTHO05D008806 7.3e-34 147.5 131 58.0
QL10p043601 Quercus lobata HOM05D000068 ORTHO05D008806 7.3e-34 147.5 98 65.3
AUR62003562 Chenopodium quinoa HOM05D000068 ORTHO05D008806 9.6e-34 147.1 100 68.0
Duzib147G0127 Durio zibethinus HOM05D000068 ORTHO05D008806 9.6e-34 147.1 98 67.3
Eucgr.H04964 Eucalyptus grandis HOM05D000068 ORTHO05D008806 9.6e-34 147.1 97 66.0
HPP92_013930 Vanilla planifolia HOM05D000068 ORTHO05D008806 9.6e-34 147.1 96 70.8
Cc07_g18510 Coffea canephora HOM05D000068 ORTHO05D008806 1.2e-33 146.7 96 68.8
Thhalv10025967m.g Eutrema salsugineum HOM05D000068 ORTHO05D008806 1.2e-33 146.7 111 64.0
FAN04G2941 Fragaria x ananassa HOM05D000068 ORTHO05D008806 1.2e-33 146.7 98 67.3
Manes.13G087200 Manihot esculenta HOM05D000068 ORTHO05D008806 1.2e-33 146.7 115 61.7
BcaC09g52159 Brassica carinata HOM05D000068 ORTHO05D008806 1.6e-33 146.4 98 67.3
RcHm_v2.0_Chr7g0220961 Rosa chinensis HOM05D000068 ORTHO05D008806 1.6e-33 146.4 98 66.3
PGR102G3263 Punica granatum HOM05D000068 ORTHO05D008806 2.8e-33 145.6 122 57.4
Carub.0007s0703 Capsella rubella HOM05D000068 ORTHO05D008806 3.6e-33 145.2 111 60.4
A01p04820 Brassica napus HOM05D000068 ORTHO05D008806 4.7e-33 144.8 98 66.3
ECA240G0800 Erigeron canadensis HOM05D000068 ORTHO05D008806 4.7e-33 144.8 113 59.3
C01p05230 Brassica napus HOM05D000068 ORTHO05D008806 6.2e-33 144.4 98 65.3
BolC1t00502H Brassica oleracea HOM05D000068 ORTHO05D008806 6.2e-33 144.4 133 54.1
BraA01t00465Z Brassica rapa HOM05D000068 ORTHO05D008806 8.1e-33 144.1 98 65.3
Medtr3g096300 Medicago truncatula HOM05D000068 ORTHO05D008806 1.1e-32 143.7 97 64.9
Medtr8g442660 Medicago truncatula HOM05D000068 ORTHO05D008806 1.1e-32 143.7 97 64.9
CsaV3_2G019520 Cucumis sativus L. HOM05D006783 ORTHO05D008330 1.4e-32 143.3 98 64.3
vmacro12800 Vaccinium macrocarpon HOM05D000068 ORTHO05D008806 1.4e-32 143.3 97 69.1
Lj2C606G6 Lonicera japonica HOM05D000068 ORTHO05D008806 1.8e-32 142.9 103 62.1
Psat5g062760 Pisum sativum HOM05D000068 ORTHO05D008806 4.0e-32 141.7 97 64.9
Hund04412 Selenicereus undatus HOM05D000068 ORTHO05D008806 4.0e-32 141.7 89 71.9
ClCG02G000320 Citrullus lanatus HOM05D000068 ORTHO05D008806 5.2e-32 141.4 98 64.3
CANSAT01G0584 Cannabis sativa HOM05D000068 ORTHO05D008806 6.9e-32 141.0 98 63.3
MELO3C023222.2 Cucumis melo HOM05D000068 ORTHO05D008806 6.9e-32 141.0 98 64.3
ATR0624G077 Amborella trichopoda HOM05D000068 ORTHO05D008806 8.9e-32 140.6 98 62.2
Ca_16947_v3 Cicer arietinum L. HOM05D000068 ORTHO05D008806 1.2e-31 140.2 97 63.9
Ca_16966_v3 Cicer arietinum L. HOM05D000068 ORTHO05D008806 1.2e-31 140.2 97 63.9
CDE08G1570 Ceratophyllum demersum HOM05D000068 ORTHO05D008806 3.4e-31 138.7 96 66.7
arahy.Tifrunner.gnm1.ann1.83XS31 Arachis hypogaea HOM05D000068 ORTHO05D008806 4.4e-31 138.3 111 57.7
CiPaw.04G082400 Carya illinoinensis HOM05D000068 ORTHO05D008806 5.8e-31 137.9 101 62.4
Lj1g0020952 Lotus japonicus HOM05D000068 ORTHO05D008806 7.6e-31 137.5 97 62.9
Phvul.009G150700 Phaseolus vulgaris HOM05D000068 ORTHO05D008806 2.2e-30 136.0 98 61.2
VMungo1309G2028 Vigna mungo HOM05D000068 ORTHO05D008806 3.8e-30 135.2 98 61.2
Lalb_Chr11g0068451 Lupinus albus HOM05D000068 ORTHO05D008806 4.9e-30 134.8 100 62.0
MBI18_g24470_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D008806 4.9e-30 134.8 102 61.8
Glyma.06G153500 Glycine max HOM05D000068 ORTHO05D008806 6.4e-30 134.4 105 59.0
Pp3c3_29910 Physcomitrium patens HOM05D000068 ORTHO05D008806 1.1e-29 133.7 118 53.4
Mapoly0113s0007 Marchantia polymorpha HOM05D000068 ORTHO05D008806 1.9e-29 132.9 98 65.3
Os01g0770500 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D008806 3.2e-29 132.1 94 60.6
Sc16g0003810 Simmondsia chinensis HOM05D000068 ORTHO05D008806 4.2e-29 131.7 107 62.6
Cpa.g.sc42.158 Carica papaya HOM05D000068 ORTHO05D008806 1.0e-27 127.1 101 59.4
Nitab4.5_0000650g0070 Nicotiana tabacum HOM05D000068 ORTHO05D008806 1.0e-27 127.1 98 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3399 Anthoceros agrestis HOM05D000068 ORTHO05D008806 6.6e-27 124.4 94 60.6
SMO147G0198 Selaginella moellendorffii HOM05D000068 ORTHO05D008806 8.7e-27 124.0 93 61.3
arahy.Tifrunner.gnm1.ann1.5B35UI Arachis hypogaea HOM05D000068 ORTHO05D008806 2.5e-26 122.5 98 56.1
TPR.G28227 Trifolium pratense HOM05D000068 ORTHO05D008806 3.1e-24 115.5 83 62.7
CBR_g3688 Chara braunii HOM05D000068 ORTHO05D008806 4.5e-23 111.7 101 59.4
Cre03.g164150 Chlamydomonas reinhardtii HOM05D000068 ORTHO05D008806 8.4e-22 107.5 89 59.6
MCO05G724 Micromonas commoda HOM05D000068 ORTHO05D008806 2.7e-20 102.4 72 65.3
PRCOL_00003516 Prasinoderma coloniale HOM05D000068 ORTHO05D008806 2.3e-19 99.4 78 61.5
Sed0026696 Sechium edule HOM05D000068 ORTHO05D008806 1.9e-18 96.3 59 76.3
arahy.Tifrunner.gnm1.ann1.3V9QR8 Arachis hypogaea HOM05D000068 ORTHO05D008806 2.9e-14 82.4 111 41.4
Hma1.2p1_0476F.1_g160870 Hydrangea macrophylla HOM05D000068 ORTHO05D008806 1.9e-13 79.7 50 70.0
Zm00001eb370030 Zea mays HOM05D000068 ORTHO05D008806 3.2e-13 79.0 94 43.6
SEGI_26070 Sequoiadendron giganteum HOM05D000068 ORTHO05D008806 1.0e-11 73.9 77 50.6
Nitab4.5_0006931g0020 Nicotiana tabacum HOM05D000068 ORTHO05D008806 7.4e-10 67.8 40 70.0
TAR628G1722 Trochodendron aralioides HOM05D000068 ORTHO05D001847 2.1e-09 66.2 42 66.7
Sc03g0006360 Simmondsia chinensis HOM05D007470 ORTHO05D009337 4.5e-07 58.5 112 33.0
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 7.6e-07 57.8 65 38.5
Pp3c3_25680 Physcomitrium patens HOM05D007470 ORTHO05D009337 1.3e-06 57.0 137 30.7
HanXRQChr17g0551531 Helianthus annuus HOM05D007470 ORTHO05D009337 2.9e-06 55.8 108 31.5
Atru.chr6.2593 Acer truncatum HOM05D007470 ORTHO05D009337 3.8e-06 55.5 118 33.1
Carub.0172s0002 Capsella rubella HOM05D000610 ORTHO05D001284 3.8e-06 55.5 102 32.4
Ca_29375_v3 Cicer arietinum L. HOM05D000068 ORTHO05D011688 3.8e-06 55.5 105 31.4
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 3.8e-06 55.5 61 39.3
PSO017G3475 Papaver somniferum HOM05D005982 ORTHO05D007891 3.8e-06 55.5 86 36.0
unitig_62.g23780 Utricularia gibba HOM05D005982 ORTHO05D007891 3.8e-06 55.5 77 39.0
CDE09G1326 Ceratophyllum demersum HOM05D005982 ORTHO05D007891 4.9e-06 55.1 77 36.4
Haze_27282 Corylus avellana HOM05D000610 ORTHO05D011688 4.9e-06 55.1 85 34.1
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 4.9e-06 55.1 57 42.1
ECA246G0009 Erigeron canadensis HOM05D007470 ORTHO05D009337 4.9e-06 55.1 110 30.0
Thhalv10023276m.g Eutrema salsugineum HOM05D000610 ORTHO05D001284 4.9e-06 55.1 67 40.3
Sp2g24900 Schrenkiella parvula HOM05D000610 ORTHO05D001284 4.9e-06 55.1 67 40.3
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 4.9e-06 55.1 57 42.1
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 6.5e-06 54.7 116 34.5
Glyma.19G094500 Glycine max HOM05D007470 ORTHO05D009337 6.5e-06 54.7 115 29.6
Medtr7g028600 Medicago truncatula HOM05D007470 ORTHO05D009337 6.5e-06 54.7 118 29.7
PSO675G2550 Papaver somniferum HOM05D005982 ORTHO05D007891 6.5e-06 54.7 75 38.7
SalBow2G3011 Salvia bowleyana HOM05D000068 ORTHO05D008806 6.5e-06 54.7 69 36.2
Actinidia36214 Actinidia chinensis HOM05D007470 ORTHO05D009337 8.4e-06 54.3 118 30.5
AL8G38460 Arabidopsis lyrata HOM05D000610 ORTHO05D001284 8.4e-06 54.3 67 40.3
BcaC06g33131 Brassica carinata HOM05D000610 ORTHO05D001284 8.4e-06 54.3 67 40.3
A03p47440 Brassica napus HOM05D000610 ORTHO05D001284 8.4e-06 54.3 67 40.3
BraA03t13861Z Brassica rapa HOM05D000610 ORTHO05D001284 8.4e-06 54.3 67 40.3
CDE05G2906 Ceratophyllum demersum HOM05D007470 ORTHO05D009337 8.4e-06 54.3 116 31.0
FvH4_6g53800 Fragaria vesca HOM05D007470 ORTHO05D009337 8.4e-06 54.3 116 31.0
TAR629G2381 Trochodendron aralioides HOM05D007470 ORTHO05D009337 8.4e-06 54.3 121 29.8


User provided reference genes

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