Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.0e-100 369.0 173 100.0
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 9.7e-23 110.9 113 49.6
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.3e-22 110.5 119 46.2
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.3e-22 110.5 119 46.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.7e-22 110.2 113 51.3
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 2.8e-22 109.4 113 48.7
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 3.7e-22 109.0 113 49.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 6.3e-22 108.2 110 51.8
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 6.3e-22 108.2 113 48.7
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.4e-21 107.1 113 50.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.8e-21 106.7 112 48.2
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.8e-21 106.7 113 47.8
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.8e-21 106.7 113 47.8
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.4e-21 106.3 113 48.7
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 49.6
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 49.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 49.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 49.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 49.6
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 47.8
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 4.1e-21 105.5 113 47.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 5.3e-21 105.1 113 48.7
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.3e-21 105.1 113 49.6
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 5.3e-21 105.1 113 48.7
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 7.0e-21 104.8 110 51.8
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.1e-21 104.4 99 52.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 9.1e-21 104.4 113 48.7
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 9.1e-21 104.4 84 59.5
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.2e-20 104.0 113 48.7
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-20 104.0 113 48.7
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.2e-20 104.0 113 47.8
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.2e-20 104.0 113 49.6
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.6e-20 103.6 113 48.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-20 103.6 113 48.7
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-20 103.6 113 48.7
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.6e-20 103.6 113 48.7
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.0e-20 103.2 113 48.7
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 2.0e-20 103.2 113 48.7
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.0e-20 103.2 113 48.7
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.6e-20 102.8 113 48.7
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-20 102.8 113 47.8
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-20 102.8 113 47.8
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.6e-20 102.8 113 47.8
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.6e-20 102.8 113 48.7
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 3.5e-20 102.4 87 56.3
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.5e-20 102.4 111 48.6
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 3.5e-20 102.4 113 47.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 4.5e-20 102.1 114 46.5
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.9e-20 101.7 113 47.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.9e-20 101.7 113 47.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.9e-20 101.7 113 47.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 7.7e-20 101.3 110 46.4
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 7.7e-20 101.3 111 48.6
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 7.7e-20 101.3 113 47.8
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 47.8
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 47.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 47.8
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 46.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 46.9
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.3e-19 100.5 113 46.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.7e-19 100.1 113 46.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.7e-19 100.1 113 46.9
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.7e-19 100.1 113 44.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.7e-19 100.1 113 46.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.9e-19 99.4 113 45.1
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-19 99.4 113 47.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 2.9e-19 99.4 113 46.9
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.9e-19 99.4 113 46.9
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 46.0
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 45.1
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 45.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 46.0
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 45.1
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 3.8e-19 99.0 113 46.0
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 5.0e-19 98.6 113 45.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.0e-19 98.6 113 45.1
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 5.0e-19 98.6 113 46.0
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.5e-19 98.2 84 56.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 8.5e-19 97.8 113 45.1
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 8.5e-19 97.8 132 42.4
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 8.5e-19 97.8 113 44.2
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-18 97.4 86 53.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.1e-18 97.4 86 54.7
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.5e-18 97.1 113 44.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.5e-18 97.1 113 45.1
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.5e-18 96.3 113 45.1
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 3.2e-18 95.9 113 45.1
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.2e-18 95.9 113 44.2
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.2e-18 95.9 113 44.2
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.2e-18 95.9 113 44.2
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 4.2e-18 95.5 113 45.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 5.5e-18 95.1 113 44.2
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.5e-18 95.1 99 44.4
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 7.2e-18 94.7 113 44.2
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 9.4e-18 94.4 113 45.1
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 9.4e-18 94.4 110 46.4
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 9.4e-18 94.4 113 44.2
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 9.4e-18 94.4 113 45.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 9.4e-18 94.4 113 43.4
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.2e-17 94.0 113 44.2
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.6e-17 93.6 113 43.4
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.1e-17 93.2 113 43.4
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 2.1e-17 93.2 113 44.2
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.1e-17 93.2 113 43.4
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.7e-17 92.8 113 43.4
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.7e-17 92.8 113 44.2
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 6.1e-17 91.7 113 42.5
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.0e-16 90.9 113 43.4
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.4e-16 90.5 106 46.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 4.0e-16 89.0 113 42.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.2e-15 87.4 113 42.5
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.5e-15 87.0 113 41.6
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 3.4e-15 85.9 76 51.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.7e-14 83.6 86 48.8
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.7e-14 82.4 72 55.6
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.3e-14 81.6 113 38.9
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 8.3e-14 81.3 134 36.6
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.1e-13 80.9 113 38.1
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.4e-13 80.5 112 37.5
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.8e-13 80.1 72 52.8
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.8e-13 80.1 69 58.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 4.5e-12 75.5 94 41.5
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.3e-11 73.9 72 47.2
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.9e-11 72.8 124 37.1
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 6.5e-11 71.6 72 48.6
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 8.5e-11 71.2 81 40.7
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.5e-10 69.7 89 38.2
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.7e-09 65.5 89 34.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.0e-08 64.3 113 36.3
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 6.8e-08 61.6 82 36.6
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 6.8e-08 61.6 82 36.6
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 7.5e-07 58.2 64 46.9
vmacro17423 Vaccinium macrocarpon HOM05D008460 ORTHO05D426650 2.8e-06 56.2 94 41.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.9e-06 55.5 27 77.8


User provided reference genes

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