Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 7.3e-312 1073.2 534 100.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 9.5e-194 680.6 510 68.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 8.3e-190 667.5 509 67.6
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.0e-187 658.3 506 66.4
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.0e-187 658.3 500 66.4
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.1e-186 657.1 500 66.4
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-185 653.3 513 65.9
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 9.9e-183 644.0 513 64.1
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.9e-182 642.5 508 65.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.9e-182 642.5 509 65.4
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.4e-181 640.2 509 64.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.2e-181 639.0 513 63.5
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 5.4e-181 638.3 512 64.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.2e-180 637.1 513 64.5
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.0e-180 634.8 497 65.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.8e-180 634.4 507 63.7
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.0e-179 634.0 512 63.9
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.3e-179 633.6 510 64.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.3e-179 632.9 509 64.0
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.3e-179 632.9 508 64.4
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 3.9e-179 632.1 510 64.3
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.9e-179 632.1 510 63.9
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.9e-179 632.1 513 63.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 5.1e-179 631.7 506 63.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 5.1e-179 631.7 506 63.0
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 5.1e-179 631.7 510 64.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.6e-179 630.9 509 64.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 1.9e-178 629.8 508 64.2
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-178 629.8 511 63.4
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.3e-178 629.0 509 63.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-178 628.6 505 62.4
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.3e-178 628.6 504 62.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 7.3e-178 627.9 506 62.8
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 7.3e-178 627.9 509 63.5
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 7.3e-178 627.9 509 62.9
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.3e-178 627.9 509 63.9
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.2e-177 627.1 514 63.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.2e-177 627.1 508 63.2
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.6e-177 626.7 507 63.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.6e-177 626.7 508 63.6
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-177 625.9 504 62.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.6e-177 625.5 512 63.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 3.6e-177 625.5 516 62.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.7e-177 625.2 504 62.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 4.7e-177 625.2 504 62.9
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 8.1e-177 624.4 504 62.9
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 8.1e-177 624.4 504 62.9
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 8.1e-177 624.4 513 64.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.1e-176 624.0 508 63.4
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.4e-176 623.6 506 62.6
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-176 623.6 504 62.3
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-176 623.6 507 63.1
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.8e-176 623.2 504 62.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-176 622.5 504 62.5
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 3.1e-176 622.5 511 61.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 4.0e-176 622.1 514 61.7
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.0e-176 622.1 516 62.4
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 8.9e-176 620.9 515 62.7
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 8.9e-176 620.9 504 62.5
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.6e-175 619.4 505 63.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.7e-174 616.7 509 63.7
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.9e-174 615.9 508 62.2
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 4.9e-174 615.1 506 62.6
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.9e-174 615.1 505 62.8
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 6.4e-174 614.8 508 62.6
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 6.4e-174 614.8 504 62.7
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.1e-173 614.0 510 62.7
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.4e-173 613.6 511 61.3
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.4e-173 612.8 546 59.5
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 5.4e-173 611.7 512 61.3
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 9.2e-173 610.9 506 62.3
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.2e-173 610.9 502 62.2
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.2e-172 610.5 512 62.5
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 2.7e-172 609.4 509 60.3
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.7e-172 609.4 492 63.6
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 4.6e-172 608.6 536 59.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.0e-171 607.4 507 60.4
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.9e-171 605.5 511 61.4
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.1e-171 605.1 485 63.5
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.6e-171 604.7 511 60.5
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.7e-171 604.4 510 62.7
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.5e-170 602.8 476 66.2
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.3e-170 602.4 547 58.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.3e-170 602.1 476 65.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 1.6e-169 600.1 547 58.7
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.6e-169 600.1 499 62.1
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.8e-168 596.7 513 61.0
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.4e-168 596.3 513 58.9
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.0e-168 595.5 526 58.4
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.2e-168 595.1 507 59.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 3.8e-166 589.0 501 59.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.8e-166 589.0 514 59.9
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.4e-166 587.8 509 61.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 8.4e-166 587.8 521 60.5
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.1e-165 587.4 514 59.5
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.4e-165 587.0 454 67.4
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.4e-165 587.0 510 61.8
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 9.3e-165 584.3 513 60.6
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.2e-164 583.9 497 60.4
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.8e-164 581.3 510 61.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.7e-163 580.1 500 60.2
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 9.6e-162 574.3 500 59.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.6e-162 574.3 511 60.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.3e-161 573.9 599 53.4
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 8.1e-161 571.2 480 62.1
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.8e-160 570.1 477 62.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 1.2e-159 567.4 584 52.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.8e-158 562.4 507 58.6
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.1e-157 560.8 459 63.2
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 4.2e-157 558.9 449 63.5
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.4e-157 558.5 508 58.9
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.7e-156 556.2 510 57.1
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.3e-155 553.9 506 57.3
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.4e-154 548.1 530 57.2
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.3e-153 547.4 516 58.1
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 3.7e-153 545.8 511 56.2
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 4.0e-152 542.3 564 53.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.9e-152 541.6 535 57.0
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.9e-152 541.6 511 58.3
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 9.0e-152 541.2 454 61.2
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.6e-151 538.1 511 57.9
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 8.2e-145 518.1 470 59.1
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-140 503.1 402 63.2
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.1e-139 498.8 399 62.7
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.2e-132 477.6 542 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 7.9e-132 474.9 521 49.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.2e-127 461.1 418 56.9
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 7.4e-122 441.8 661 42.7
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.5e-119 434.1 456 54.6
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.7e-116 423.3 487 50.9
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.1e-114 417.9 475 51.2
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.2e-101 373.2 284 68.7
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-97 361.3 338 55.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 9.1e-96 355.1 273 65.9
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.6e-95 354.4 280 63.9
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 5.2e-83 312.8 236 64.4
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 7.3e-77 292.4 247 61.9
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 6.8e-75 285.8 265 56.2
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.3e-65 255.0 210 60.5
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.6e-63 248.1 216 61.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 7.3e-61 239.2 488 36.1
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 6.6e-54 216.1 581 29.6
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-48 198.7 364 35.2
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 4.5e-42 176.8 138 63.8
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 7.6e-34 149.4 108 69.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.8e-33 147.1 86 74.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.6e-31 140.2 212 36.8
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-24 118.6 68 77.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.5e-24 116.7 250 35.6
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.5e-24 116.7 250 35.6
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.7e-23 114.4 112 49.1
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-21 109.0 107 55.1
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.7e-20 104.0 62 82.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 6.3e-20 103.2 179 32.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 5.0e-17 93.6 116 48.3
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.8e-12 77.0 74 55.4
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 6.5e-09 66.6 83 49.4
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.3e-06 58.2 36 72.2
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.7e-06 56.6 41 61.0


User provided reference genes

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