Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 5.8e-115 417.5 205 100.0
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 9.3e-81 303.9 205 68.8
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.9e-66 255.8 204 59.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 7.1e-65 251.1 205 57.1
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 6.0e-64 248.1 204 57.8
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 7.4e-62 241.1 206 58.3
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 7.4e-62 241.1 206 57.3
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 9.6e-62 240.7 206 58.7
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 3.7e-61 238.8 205 55.6
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 6.3e-61 238.0 206 55.8
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.8e-60 236.5 206 55.8
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 2.4e-60 236.1 206 56.3
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 6.9e-60 234.6 206 56.8
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 1.2e-59 233.8 204 56.9
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 1.5e-59 233.4 206 56.8
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 1.5e-59 233.4 206 54.9
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 2.0e-59 233.0 206 54.4
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 2.6e-59 232.6 206 56.3
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 2.6e-59 232.6 206 56.3
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 3.4e-59 232.3 206 56.3
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 3.4e-59 232.3 206 55.8
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 4.5e-59 231.9 206 54.9
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 4.5e-59 231.9 206 55.3
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 4.5e-59 231.9 206 53.9
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 4.5e-59 231.9 206 56.3
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 4.5e-59 231.9 206 56.3
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 7.6e-59 231.1 206 54.9
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 1.0e-58 230.7 206 55.8
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.7e-58 229.9 206 54.9
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 2.2e-58 229.6 205 53.7
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 3.8e-58 228.8 206 53.9
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 5.0e-58 228.4 207 56.5
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 6.5e-58 228.0 214 55.1
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 6.5e-58 228.0 206 53.9
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 1.1e-57 227.3 206 55.8
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 1.4e-57 226.9 204 56.4
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 1.4e-57 226.9 204 54.9
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.9e-57 226.5 212 54.7
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 1.9e-57 226.5 206 54.4
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.5e-57 226.1 212 54.7
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 4.2e-57 225.3 207 55.1
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 4.2e-57 225.3 206 54.4
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 7.2e-57 224.6 206 53.4
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.2e-57 224.6 206 53.9
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 9.3e-57 224.2 206 53.9
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 9.3e-57 224.2 176 60.8
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 9.3e-57 224.2 206 53.4
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 1.2e-56 223.8 206 53.4
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 1.2e-56 223.8 206 54.4
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 1.2e-56 223.8 212 54.2
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 1.2e-56 223.8 206 54.9
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 1.6e-56 223.4 207 55.1
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.6e-56 223.4 212 54.2
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 2.1e-56 223.0 206 54.4
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 2.1e-56 223.0 229 49.3
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 3.6e-56 222.2 211 53.6
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 3.6e-56 222.2 206 54.9
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 4.6e-56 221.9 206 55.3
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 4.6e-56 221.9 206 54.4
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 6.1e-56 221.5 215 54.0
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 6.1e-56 221.5 204 53.4
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 7.9e-56 221.1 206 55.3
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 1.0e-55 220.7 206 52.4
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 1.3e-55 220.3 207 54.1
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 2.3e-55 219.5 176 59.7
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 3.0e-55 219.2 204 52.9
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 3.0e-55 219.2 206 52.4
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 3.9e-55 218.8 212 52.4
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 6.7e-55 218.0 231 48.9
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.1e-54 217.2 207 52.7
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.5e-54 216.9 206 50.5
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 1.5e-54 216.9 206 52.4
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 1.5e-54 216.9 206 52.4
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 1.9e-54 216.5 207 53.1
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 2.5e-54 216.1 207 52.7
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 7.4e-54 214.5 209 52.6
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 1.3e-53 213.8 176 57.4
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.6e-53 213.4 206 51.9
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 2.2e-53 213.0 206 50.5
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.2e-53 213.0 206 51.0
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 2.8e-53 212.6 202 55.0
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 2.8e-53 212.6 206 50.5
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 3.7e-53 212.2 187 53.5
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 3.7e-53 212.2 207 52.2
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 3.7e-53 212.2 204 50.0
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 4.8e-53 211.8 206 50.0
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 4.8e-53 211.8 207 50.7
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 6.3e-53 211.5 201 52.7
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 8.2e-53 211.1 201 54.2
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 8.2e-53 211.1 206 48.5
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 1.1e-52 210.7 206 49.0
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 1.4e-52 210.3 206 49.5
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 1.8e-52 209.9 206 50.5
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.8e-52 209.9 204 52.5
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.8e-52 209.9 202 50.0
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 2.4e-52 209.5 204 48.5
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 2.4e-52 209.5 245 47.3
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 3.1e-52 209.1 204 49.5
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 3.1e-52 209.1 206 49.5
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.1e-52 209.1 206 50.5
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 4.1e-52 208.8 180 56.7
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 5.3e-52 208.4 204 49.0
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 5.3e-52 208.4 204 49.0
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 5.3e-52 208.4 204 49.0
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 5.3e-52 208.4 201 51.7
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 5.3e-52 208.4 207 52.7
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 6.9e-52 208.0 207 49.3
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 1.2e-51 207.2 204 52.5
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 1.5e-51 206.8 206 49.0
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 1.5e-51 206.8 255 45.9
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-51 206.8 204 51.0
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 2.0e-51 206.5 206 51.5
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 2.6e-51 206.1 204 48.5
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 2.6e-51 206.1 204 48.5
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 3.4e-51 205.7 182 54.4
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 4.5e-51 205.3 176 57.4
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 5.9e-51 204.9 206 48.1
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.7e-50 203.4 206 48.1
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 1.7e-50 203.4 219 47.9
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 5.0e-50 201.8 205 49.8
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.4e-49 200.3 171 55.6
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 4.2e-49 198.7 203 47.8
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 5.5e-49 198.4 176 52.8
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 7.2e-49 198.0 178 55.1
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 7.2e-49 198.0 214 46.7
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 7.2e-49 198.0 201 49.3
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 7.2e-49 198.0 206 51.0
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 9.4e-49 197.6 214 46.3
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 3.6e-48 195.7 200 48.0
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 2.3e-47 193.0 207 48.3
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 5.1e-47 191.8 176 52.8
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 4.4e-46 188.7 202 46.5
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 1.7e-45 186.8 303 36.3
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 4.8e-45 185.3 195 46.2
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 5.3e-44 181.8 146 61.0
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 2.0e-43 179.9 197 48.7
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.7e-42 176.8 205 45.4
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 1.4e-41 173.7 230 43.5
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 7.2e-41 171.4 204 45.1
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 9.4e-41 171.0 206 44.2
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 2.7e-40 169.5 206 43.7
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 1.0e-39 167.5 197 44.2
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 3.0e-39 166.0 176 44.9
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 7.4e-38 161.4 195 42.6
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 4.8e-37 158.7 125 62.4
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.5e-35 152.5 186 42.5
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 1.0e-34 151.0 199 41.7
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 3.8e-34 149.1 186 41.4
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 6.5e-34 148.3 121 60.3
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 8.5e-34 147.9 167 47.3
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 2.5e-33 146.4 137 55.5
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 4.2e-33 145.6 172 43.0
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 5.5e-33 145.2 196 40.8
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 2.7e-32 142.9 119 57.1
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 4.7e-32 142.1 143 49.0
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 6.1e-32 141.7 171 42.1
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 8.0e-32 141.4 144 47.9
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.8e-31 140.2 194 39.7
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 6.7e-31 138.3 166 44.6
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 1.2e-30 137.5 120 59.2
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 7.0e-28 128.3 145 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 1.8e-20 103.6 142 39.4
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 3.5e-19 99.4 195 33.8
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 8.8e-15 84.7 98 45.9
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 8.8e-15 84.7 98 45.9
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 4.4e-14 82.4 148 33.8
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 8.3e-13 78.2 135 35.6
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 2.4e-12 76.6 62 54.8
C04p60570 Brassica napus HOM05D003989 ORTHO05D004626 4.1e-12 75.9 81 49.4
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 9.2e-12 74.7 118 37.3
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.6e-11 73.9 165 30.9
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 1.0e-10 71.2 95 42.1
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 4.0e-07 59.3 46 50.0
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 4.0e-07 59.3 46 50.0
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 4.0e-07 59.3 46 50.0
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 6.8e-07 58.5 46 50.0


User provided reference genes

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