Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 4.6e-211 737.6 371 100.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 4.5e-102 375.6 308 64.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.3e-101 374.0 312 63.5
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.9e-101 372.9 283 68.2
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 8.6e-101 371.3 310 61.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.3e-100 369.0 291 65.3
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 7.3e-100 368.2 251 72.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-99 367.5 286 67.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.2e-99 367.5 247 71.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.2e-99 367.5 250 72.0
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.6e-99 367.1 295 65.8
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.8e-99 366.3 280 67.5
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 8.0e-99 364.8 297 64.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.0e-98 364.4 291 65.6
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.0e-98 364.4 291 65.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.8e-98 363.6 294 62.6
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 6.8e-98 361.7 222 78.4
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 6.8e-98 361.7 288 64.9
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 8.9e-98 361.3 290 65.2
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.2e-97 360.9 222 77.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.5e-97 360.5 222 77.9
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.0e-97 360.1 220 78.2
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.4e-97 359.4 281 64.8
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 4.4e-97 359.0 281 64.8
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 5.7e-97 358.6 222 77.0
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 5.7e-97 358.6 293 62.8
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 5.7e-97 358.6 278 66.2
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 9.8e-97 357.8 286 65.7
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-96 357.5 297 64.0
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.3e-96 357.5 269 68.8
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.7e-96 357.1 250 68.8
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.7e-96 357.1 278 66.2
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-96 356.3 270 66.3
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 2.9e-96 356.3 222 76.1
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.9e-96 356.3 249 71.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.7e-96 355.9 250 70.0
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.7e-96 355.9 250 68.8
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 3.7e-96 355.9 275 67.3
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.7e-96 355.9 270 66.3
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 6.4e-96 355.1 278 65.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.3e-96 354.8 262 68.7
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.4e-95 354.0 222 75.7
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 1.8e-95 353.6 269 66.5
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.8e-95 353.6 222 76.6
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 3.2e-95 352.8 297 63.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.2e-95 352.8 250 68.8
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.2e-95 352.8 290 64.5
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 4.1e-95 352.4 255 69.0
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 4.1e-95 352.4 294 62.6
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 4.1e-95 352.4 295 63.1
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.1e-95 352.4 266 67.7
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 7.0e-95 351.7 260 67.3
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.2e-94 350.9 278 65.1
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.6e-94 350.5 222 76.6
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.6e-94 350.5 222 75.7
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.6e-94 350.5 254 68.9
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.0e-94 350.1 243 71.6
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.7e-94 349.7 222 76.6
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.5e-94 349.4 272 64.7
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 3.5e-94 349.4 258 67.8
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.6e-94 349.0 222 75.2
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.9e-94 348.6 285 63.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.0e-93 347.8 253 68.4
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.7e-93 347.1 250 68.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 2.3e-93 346.7 222 75.2
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.0e-93 346.3 254 67.3
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.1e-92 344.4 320 59.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.1e-92 344.4 253 67.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.5e-92 344.0 222 73.4
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.5e-92 344.0 241 69.3
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.5e-92 343.2 275 64.4
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.5e-92 343.2 255 67.8
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 3.3e-92 342.8 237 71.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 3.3e-92 342.8 260 66.2
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 3.3e-92 342.8 261 65.5
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.3e-92 342.4 298 60.4
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 4.3e-92 342.4 222 74.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 7.3e-92 341.7 250 67.2
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 7.3e-92 341.7 249 67.9
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.2e-91 340.9 278 64.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.6e-91 340.5 277 63.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.6e-91 340.5 277 63.2
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.6e-91 340.5 277 63.2
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.6e-91 340.5 294 61.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 2.1e-91 340.1 295 60.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.1e-91 340.1 274 63.1
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.6e-91 339.3 277 62.5
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.0e-91 338.2 277 62.5
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 8.0e-91 338.2 250 66.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.4e-90 337.4 277 62.8
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.4e-90 337.4 305 59.7
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.1e-90 336.3 247 66.8
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.1e-90 336.3 250 65.2
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.8e-90 335.1 275 63.3
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 8.9e-90 334.7 221 72.9
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.5e-89 334.0 222 71.6
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-89 334.0 273 63.4
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.3e-88 330.9 293 61.1
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.9e-88 329.7 221 72.4
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.1e-87 325.9 362 51.1
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.4e-87 325.5 217 72.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.0e-87 325.1 283 60.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.2e-86 324.3 331 54.7
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.5e-86 322.8 261 63.2
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.6e-86 322.4 203 75.4
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-85 320.5 266 62.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.3e-85 320.1 222 71.2
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 9.5e-84 314.7 282 59.2
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-82 310.1 323 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.2e-81 307.8 217 68.7
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.4e-79 300.1 230 66.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.2e-79 299.7 200 73.5
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 5.4e-79 298.9 222 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.9e-77 292.7 207 68.6
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.5e-76 290.8 210 68.1
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.5e-76 290.8 222 62.2
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 6.2e-75 285.4 240 61.7
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 8.1e-75 285.0 219 65.8
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.4e-74 284.3 237 62.0
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 2.3e-74 283.5 251 61.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 5.2e-74 282.3 230 64.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.6e-73 280.0 182 73.1
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.4e-71 273.5 222 63.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.4e-63 247.7 228 57.9
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.7e-62 243.4 224 53.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 3.3e-60 236.5 213 54.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-56 224.6 221 50.7
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-56 224.6 221 50.7
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 2.2e-56 223.8 142 78.2
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 6.4e-56 222.2 142 74.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 4.2e-55 219.5 206 55.8
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.6e-52 208.4 133 73.7
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.6e-51 206.5 435 35.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-49 201.4 228 46.5
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 7.6e-49 198.7 280 41.1
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.4e-47 194.5 269 40.5
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.2e-41 174.9 111 72.1
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 7.6e-41 172.2 165 57.0
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.9e-36 157.5 112 68.8
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 3.7e-35 153.3 166 53.0
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-34 151.8 144 56.9
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.9e-34 149.1 97 73.2
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.1e-31 141.7 97 71.1
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.6e-30 137.9 109 58.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.1e-30 136.0 101 72.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 6.1e-30 136.0 87 74.7
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.2e-24 117.5 91 67.0
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 3.1e-18 97.1 67 68.7
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 5.9e-17 92.8 59 78.0
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.2e-16 90.9 59 72.9
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 8.2e-11 72.4 45 71.1
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 9.4e-07 58.9 176 30.7


User provided reference genes

Program Settings