Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.7e-149 531.9 262 100.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 4.2e-54 215.7 368 38.0
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.2e-51 207.6 373 38.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.2e-49 199.5 371 37.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.1e-49 199.1 369 37.7
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.1e-49 199.1 369 37.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.0e-47 194.5 373 36.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-47 194.1 313 40.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.6e-47 191.8 312 40.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.9e-46 190.3 376 35.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.5e-46 189.9 369 38.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 6.1e-45 185.3 380 34.7
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.4e-43 179.1 380 36.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 3.7e-42 176.0 360 35.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.1e-41 174.5 370 36.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.2e-41 171.4 377 32.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 9.2e-41 171.4 380 34.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.2e-40 171.0 379 33.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.5e-40 169.5 377 32.1
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 6.0e-40 168.7 389 34.4
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 6.0e-40 168.7 361 34.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.0e-40 168.7 372 33.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.8e-40 168.3 373 33.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-39 166.8 383 34.5
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.5e-38 163.3 361 33.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.5e-38 163.3 371 34.2
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 7.3e-38 161.8 384 33.9
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 9.5e-38 161.4 376 32.4
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.6e-37 159.5 360 33.1
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.2e-37 158.7 367 33.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.1e-36 157.9 364 34.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-36 157.5 359 33.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.4e-36 157.5 384 32.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 4.0e-36 156.0 309 35.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.0e-36 156.0 371 32.3
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.2e-36 155.6 357 33.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.8e-36 155.2 363 34.4
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 8.9e-36 154.8 340 35.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 8.9e-36 154.8 371 32.3
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-35 154.5 373 31.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 2.6e-35 153.3 365 31.5
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.4e-35 152.5 372 33.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 5.8e-35 152.1 375 33.1
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 5.8e-35 152.1 410 31.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 9.8e-35 151.4 363 33.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.3e-34 151.0 300 36.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.7e-34 149.4 405 30.1
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.7e-34 149.4 368 30.7
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 6.4e-34 148.7 382 33.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 8.3e-34 148.3 392 32.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-33 147.9 329 33.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.1e-33 147.9 373 33.0
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.4e-33 147.5 406 29.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-33 147.1 349 32.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.9e-33 147.1 381 31.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.9e-33 147.1 386 31.9
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.1e-33 146.0 325 33.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.4e-33 145.6 358 31.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 7.1e-33 145.2 399 32.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 9.2e-33 144.8 346 31.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.2e-32 144.4 360 30.0
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.5e-32 142.9 367 32.7
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.6e-32 142.5 412 31.3
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.0e-32 142.1 358 31.8
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 7.8e-32 141.7 395 31.1
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.8e-32 141.7 365 32.1
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 7.8e-32 141.7 357 32.8
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.0e-31 141.4 320 33.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.3e-31 141.0 361 33.5
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.7e-31 140.6 352 33.2
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.7e-31 140.6 321 33.0
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.7e-31 140.6 407 30.0
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.7e-31 140.6 314 34.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.3e-31 140.2 353 33.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 5.1e-31 139.0 362 31.8
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 5.1e-31 139.0 362 31.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 5.1e-31 139.0 350 30.9
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 5.1e-31 139.0 397 29.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-30 137.9 353 31.7
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.9e-30 137.1 340 32.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.9e-30 137.1 363 31.4
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.9e-30 137.1 364 31.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.3e-30 136.3 363 30.9
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 3.3e-30 136.3 360 31.7
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 5.6e-30 135.6 310 32.6
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 5.6e-30 135.6 364 30.8
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 5.6e-30 135.6 360 31.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.6e-30 135.6 360 31.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 7.3e-30 135.2 361 30.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.3e-30 135.2 358 29.3
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.5e-30 134.8 365 32.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.6e-29 134.0 366 32.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.7e-29 132.5 366 29.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-28 131.0 415 28.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 2.3e-28 130.2 414 28.7
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.3e-28 130.2 379 30.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 3.1e-28 129.8 353 31.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.1e-28 129.8 421 27.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.0e-27 127.1 205 34.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.6e-27 126.7 355 30.1
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.8e-27 125.6 344 32.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-26 124.4 369 30.4
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.7e-26 124.0 346 28.9
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.7e-26 124.0 330 30.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.2e-26 123.6 202 37.1
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-26 123.6 203 37.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-26 123.6 203 37.9
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.9e-26 123.2 234 31.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.9e-26 123.2 197 40.1
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.9e-26 122.5 207 38.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 8.3e-26 121.7 235 35.3
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-25 120.6 211 37.4
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 9.2e-25 118.2 396 27.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.6e-24 117.5 331 28.1
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.6e-24 117.5 187 38.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 6.0e-24 115.5 358 30.2
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.0e-24 115.5 193 38.3
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 7.8e-24 115.2 348 30.7
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 7.8e-24 115.2 198 36.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.0e-23 114.8 203 37.4
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-23 114.4 222 34.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-23 114.0 203 33.0
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.3e-23 113.6 365 30.7
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 2.3e-23 113.6 208 34.6
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.0e-23 113.2 380 27.4
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 3.9e-23 112.8 190 35.8
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 5.1e-23 112.5 196 34.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 8.6e-23 111.7 239 31.4
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-22 110.9 212 33.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 2.5e-22 110.2 170 40.0
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.3e-22 109.8 248 32.3
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 4.3e-22 109.4 242 31.0
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 4.3e-22 109.4 208 36.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 9.6e-22 108.2 305 28.2
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.6e-21 107.5 205 33.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.8e-21 106.7 208 34.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.8e-21 106.7 218 34.4
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 6.2e-21 105.5 226 32.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 6.2e-21 105.5 186 32.8
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 8.1e-21 105.1 201 36.3
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 8.1e-21 105.1 203 34.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.4e-20 104.4 246 32.9
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.4e-20 104.4 194 34.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.4e-20 103.6 237 29.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.4e-20 103.6 218 35.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.1e-20 103.2 215 32.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.1e-20 103.2 113 46.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.1e-20 103.2 113 46.9
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.0e-20 102.8 207 33.3
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.2e-20 102.4 103 46.6
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 6.8e-20 102.1 217 31.8
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 6.8e-20 102.1 126 44.4
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.0e-19 100.5 219 31.5
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.4e-19 99.8 293 29.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.3e-18 97.8 190 32.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-18 97.4 228 32.5
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 5.4e-17 92.4 232 30.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.8e-16 88.6 51 70.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.8e-13 79.3 216 30.6
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.1e-09 65.5 234 26.5
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.3e-09 65.1 52 57.7
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-08 64.3 49 53.1
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.0e-07 60.1 137 35.0
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-06 58.2 246 26.8


User provided reference genes

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