Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 2.0e-163 578.9 273 100.0
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.3e-111 406.0 270 69.3
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.8e-109 399.1 262 69.1
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.1e-108 397.1 270 68.1
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.4e-108 396.7 261 69.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.1e-108 395.2 270 67.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.2e-107 393.7 257 71.6
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 7.7e-107 391.0 232 76.3
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.0e-106 390.6 269 68.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 1.7e-106 389.8 243 72.8
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.9e-106 389.0 271 66.1
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.9e-106 389.0 241 72.2
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 5.0e-106 388.3 264 67.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.4e-105 386.7 265 67.5
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 3.2e-105 385.6 237 73.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-105 385.6 243 70.8
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.2e-105 385.6 244 70.5
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.2e-105 385.6 234 73.5
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 5.5e-105 384.8 269 66.9
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.5e-105 384.8 265 68.3
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 7.2e-105 384.4 244 70.9
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 9.4e-105 384.0 263 67.3
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-104 383.6 258 68.2
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.6e-104 383.3 238 72.3
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-104 382.9 261 67.4
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.7e-104 382.5 261 68.6
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.7e-104 382.5 261 68.6
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 2.7e-104 382.5 232 73.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.6e-104 382.1 249 70.7
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.6e-104 382.1 235 72.8
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 6.1e-104 381.3 252 68.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 6.1e-104 381.3 232 73.3
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.4e-103 380.2 250 70.8
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.4e-103 380.2 263 66.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.8e-103 379.8 236 72.9
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.8e-103 379.8 241 71.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.8e-103 379.8 230 74.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 5.2e-103 378.3 253 68.0
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 5.2e-103 378.3 249 69.1
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.2e-103 378.3 247 68.8
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 5.2e-103 378.3 251 69.3
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 8.8e-103 377.5 253 68.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 8.8e-103 377.5 252 67.1
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 8.8e-103 377.5 254 67.7
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.5e-102 376.7 249 68.7
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.0e-102 376.3 231 72.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 2.0e-102 376.3 234 71.8
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.6e-102 375.9 249 68.7
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.6e-102 375.9 235 71.9
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 3.3e-102 375.6 255 67.1
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 3.3e-102 375.6 244 69.7
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 3.3e-102 375.6 250 67.2
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.7e-102 374.8 241 70.1
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 5.7e-102 374.8 267 63.7
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 7.4e-102 374.4 250 66.4
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 7.4e-102 374.4 234 72.2
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 9.7e-102 374.0 232 70.3
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.7e-101 373.2 255 66.7
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.2e-101 372.9 249 67.5
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.2e-101 372.9 250 66.8
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 2.2e-101 372.9 255 68.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 2.2e-101 372.9 257 66.1
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 2.8e-101 372.5 255 67.1
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 3.7e-101 372.1 241 69.7
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 4.8e-101 371.7 250 68.0
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 4.8e-101 371.7 235 70.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.8e-101 371.7 248 67.7
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 6.3e-101 371.3 257 66.1
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 8.2e-101 370.9 252 66.3
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.1e-100 370.5 248 66.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.4e-100 370.2 250 66.8
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-100 370.2 248 66.9
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 1.4e-100 370.2 257 67.7
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-100 369.8 245 69.0
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.8e-100 369.8 248 66.9
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.8e-100 369.8 253 66.4
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 3.1e-100 369.0 245 69.0
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.1e-100 369.0 236 70.3
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 3.1e-100 369.0 260 64.2
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 4.1e-100 368.6 251 66.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 4.1e-100 368.6 252 65.9
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 4.1e-100 368.6 260 64.2
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 4.1e-100 368.6 237 69.6
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.3e-100 368.2 250 66.4
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 5.3e-100 368.2 254 65.4
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 9.1e-100 367.5 236 67.4
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.6e-99 366.7 248 66.1
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.6e-99 366.7 227 71.8
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 1.6e-99 366.7 235 70.2
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 2.0e-99 366.3 250 66.0
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 2.0e-99 366.3 243 67.1
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.6e-99 365.9 246 67.1
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.6e-99 365.9 244 67.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.6e-99 365.9 245 68.2
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.6e-99 365.9 248 66.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.6e-99 365.9 232 70.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.5e-99 365.5 249 65.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.5e-99 365.2 237 68.8
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.9e-99 364.8 241 68.5
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 7.7e-99 364.4 257 64.6
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.0e-98 364.0 253 65.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.0e-98 364.0 234 69.2
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-98 363.6 245 67.8
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.3e-98 363.6 245 67.8
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.3e-98 363.6 247 67.6
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.3e-98 363.6 239 69.5
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.3e-98 363.6 237 69.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.7e-98 363.2 246 65.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.7e-98 363.2 229 70.3
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.2e-98 362.8 237 67.9
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.8e-98 362.1 247 67.6
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 5.0e-98 361.7 246 65.9
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 5.0e-98 361.7 246 65.9
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 5.0e-98 361.7 246 65.9
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 5.0e-98 361.7 251 64.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 5.0e-98 361.7 227 70.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 8.5e-98 360.9 225 70.2
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.5e-98 360.9 247 67.2
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.1e-97 360.5 241 67.2
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.9e-97 359.8 232 70.7
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.5e-97 359.4 246 65.9
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 2.5e-97 359.4 236 68.6
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.2e-97 358.6 252 65.9
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.5e-97 358.2 236 67.8
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 5.5e-97 358.2 250 65.2
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 9.4e-97 357.5 232 69.0
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 9.4e-97 357.5 242 67.4
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.7e-96 355.9 233 70.0
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 3.6e-96 355.5 241 66.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 4.7e-96 355.1 247 64.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.8e-95 353.2 230 67.0
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 8.8e-95 350.9 242 65.3
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.0e-94 349.7 243 64.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 4.4e-94 348.6 247 64.4
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 7.5e-94 347.8 232 67.2
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.7e-93 346.7 236 65.3
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 6.3e-93 344.7 239 66.1
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 6.3e-93 344.7 227 67.0
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 8.3e-93 344.4 231 65.8
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 1.4e-92 343.6 248 63.3
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-90 337.4 231 64.9
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 1.5e-89 333.6 230 64.8
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 3.7e-85 318.9 207 71.0
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.1e-84 317.4 249 59.8
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 1.8e-84 316.6 223 63.2
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.0e-82 310.8 231 60.2
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 6.6e-82 308.1 235 58.7
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.6e-82 308.1 234 58.5
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 3.6e-80 302.4 237 58.2
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 4.7e-80 302.0 227 59.5
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.7e-74 283.5 266 54.1
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 7.0e-68 261.5 247 51.4
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.6e-67 260.4 177 68.4
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.8e-63 246.9 153 71.2
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 2.2e-61 240.0 153 69.9
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 4.0e-55 219.2 158 62.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.2e-46 191.0 224 43.8
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.8e-46 188.7 228 43.9
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.2e-36 156.0 203 44.8
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 5.1e-26 122.5 89 64.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 4.0e-23 112.8 94 56.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 2.5e-17 93.6 114 45.6
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.8e-16 89.4 157 36.9
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 5.5e-12 75.9 51 56.9


User provided reference genes

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