Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.3e-76 289.7 144 100.0
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 3.3e-16 89.0 79 58.2
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 4.3e-16 88.6 79 59.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.1e-15 86.3 79 58.2
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.8e-15 85.9 79 58.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 4.8e-15 85.1 79 55.7
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 4.8e-15 85.1 79 57.0
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 8.1e-15 84.3 79 55.7
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-14 84.0 79 57.0
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.4e-14 82.8 79 57.0
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.4e-14 82.8 79 53.2
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 2.4e-14 82.8 66 62.1
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.1e-14 82.4 73 57.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 3.1e-14 82.4 79 57.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 3.1e-14 82.4 62 61.3
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 4.0e-14 82.0 69 59.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 54.4
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 55.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 55.7
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 55.7
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 55.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.3e-14 81.6 79 53.2
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 6.9e-14 81.3 79 53.2
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 9.0e-14 80.9 79 55.7
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.0e-14 80.9 79 55.7
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.0e-14 80.9 79 55.7
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.0e-14 80.9 74 56.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 9.0e-14 80.9 79 54.4
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 9.0e-14 80.9 79 54.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.2e-13 80.5 79 54.4
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.2e-13 80.5 79 53.2
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.2e-13 80.5 59 66.1
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 57.0
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 54.4
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 54.4
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 57.0
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 55.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.5e-13 80.1 79 54.4
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 2.0e-13 79.7 88 52.3
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 2.0e-13 79.7 80 52.5
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.6e-13 79.3 79 54.4
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.6e-13 79.3 79 53.2
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 2.6e-13 79.3 75 52.0
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.6e-13 79.3 79 54.4
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 3.4e-13 79.0 61 62.3
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.4e-13 79.0 59 66.1
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.4e-13 79.0 78 52.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 3.4e-13 79.0 65 58.5
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 3.4e-13 79.0 69 55.1
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.4e-13 79.0 66 59.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.4e-13 79.0 79 51.9
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 4.5e-13 78.6 57 68.4
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.5e-13 78.6 56 66.1
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.5e-13 78.6 79 55.7
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 4.5e-13 78.6 79 54.4
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 4.5e-13 78.6 79 53.2
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 5.8e-13 78.2 79 53.2
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 5.8e-13 78.2 79 50.6
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.8e-13 78.2 79 54.4
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 5.8e-13 78.2 67 59.7
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 7.6e-13 77.8 59 64.4
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.6e-13 77.8 79 54.4
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 7.6e-13 77.8 79 54.4
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.6e-13 77.8 57 64.9
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 9.9e-13 77.4 79 49.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 9.9e-13 77.4 63 60.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.9e-13 77.4 79 53.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.3e-12 77.0 75 54.7
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.3e-12 77.0 75 54.7
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.3e-12 77.0 79 51.9
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.3e-12 77.0 79 53.2
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.3e-12 77.0 79 53.2
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.3e-12 77.0 57 63.2
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.3e-12 77.0 58 63.8
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.3e-12 77.0 76 57.9
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.3e-12 77.0 61 57.4
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.7e-12 76.6 61 60.7
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.7e-12 76.6 60 61.7
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.7e-12 76.6 79 48.1
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.7e-12 76.6 58 63.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.7e-12 76.6 79 49.4
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.7e-12 76.6 66 57.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 2.2e-12 76.3 77 50.6
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.2e-12 76.3 79 50.6
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 2.9e-12 75.9 79 53.2
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 2.9e-12 75.9 57 64.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.9e-12 75.9 63 55.6
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.9e-12 75.9 57 64.9
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.9e-12 75.9 57 64.9
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.9e-12 75.9 57 63.2
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.9e-12 75.9 57 64.9
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.8e-12 75.5 79 51.9
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 3.8e-12 75.5 63 58.7
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 3.8e-12 75.5 65 58.5
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.8e-12 75.5 54 70.4
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 3.8e-12 75.5 79 51.9
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 3.8e-12 75.5 79 53.2
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.8e-12 75.5 55 63.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.8e-12 75.5 63 55.6
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 4.9e-12 75.1 63 57.1
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 4.9e-12 75.1 58 62.1
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.9e-12 75.1 61 57.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 4.9e-12 75.1 55 65.5
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 4.9e-12 75.1 67 58.2
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.9e-12 75.1 63 54.0
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.9e-12 75.1 79 54.4
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 6.4e-12 74.7 75 52.0
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 6.4e-12 74.7 58 62.1
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.4e-12 74.3 60 58.3
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.4e-12 74.3 59 64.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 8.4e-12 74.3 59 64.4
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.4e-12 74.3 56 60.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.1e-11 73.9 79 49.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-11 73.9 44 70.5
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.1e-11 73.9 57 63.2
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-11 73.9 74 51.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.1e-11 73.9 69 56.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.1e-11 73.9 69 56.5
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.1e-11 73.9 73 53.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.4e-11 73.6 69 52.2
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.4e-11 73.6 81 50.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.4e-11 73.6 62 54.8
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.9e-11 73.2 57 63.2
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.9e-11 73.2 79 49.4
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.4e-11 72.8 55 63.6
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.4e-11 72.8 57 63.2
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 3.2e-11 72.4 57 61.4
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.2e-11 72.4 40 80.0
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 7.1e-11 71.2 57 59.6
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 7.1e-11 71.2 79 48.1
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 9.3e-11 70.9 66 53.0
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.2e-10 70.5 55 61.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-10 69.7 66 50.0
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-10 69.7 66 50.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.1e-10 69.7 51 62.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.7e-10 69.3 79 46.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.5e-10 68.9 68 52.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 3.5e-10 68.9 79 46.8
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 3.5e-10 68.9 79 46.8
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 3.5e-10 68.9 79 46.8
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 3.5e-10 68.9 60 53.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.6e-10 68.6 57 57.9
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 7.9e-10 67.8 79 45.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.0e-09 67.4 55 56.4
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.3e-09 67.0 35 80.0
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.3e-09 66.2 57 56.1
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.3e-09 66.2 57 56.1
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.0e-09 65.9 55 58.2
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.7e-09 64.7 35 77.1
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.3e-08 62.0 54 53.7
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.4e-08 61.2 35 74.3
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 2.4e-06 56.2 48 52.1


User provided reference genes

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