Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 3240.3 1669 100.0
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 1932.1 1835 59.0
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 1913.3 1831 58.5
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 1889.4 1829 58.5
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 1818.5 1863 55.6
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 1704.5 1831 51.9
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 1692.9 1830 52.4
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1681.4 1798 52.2
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 1677.5 1829 51.7
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 1670.6 1853 50.9
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 1646.7 1823 51.4
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 1646.3 1814 50.9
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 1643.2 1838 51.1
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 1641.3 1837 50.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 1637.5 1820 50.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 1631.7 1900 50.6
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 1630.9 1838 50.3
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 1628.6 1842 49.7
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 1626.3 1821 50.7
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 1622.1 1830 49.8
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 1616.7 1834 50.3
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 1615.9 1834 49.3
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1614.7 1830 50.3
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 1614.0 1844 49.7
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 1609.3 1826 50.3
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 1607.8 1821 50.4
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 1602.0 1882 49.0
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 1600.9 1838 49.0
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 1600.1 1834 49.7
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 1598.2 1839 49.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 1587.0 1837 49.6
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 1583.5 1813 49.7
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1580.1 1857 48.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 1580.1 1844 49.3
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1580.1 1832 48.1
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 1578.9 1857 48.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1578.9 1821 50.5
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1575.5 1839 48.8
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 1573.5 1826 49.1
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 1569.3 1825 48.3
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1566.6 1827 49.4
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 1564.3 1827 49.5
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 1563.9 1826 48.9
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1563.9 1833 48.4
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 1558.1 1830 48.0
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1556.2 1838 47.9
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 1555.4 1827 49.0
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1555.0 1835 48.7
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 1554.7 1832 49.0
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1553.9 1826 49.1
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 1547.7 1859 49.4
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 1545.4 1836 48.4
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 1545.4 1844 47.6
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 1543.1 1816 47.5
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 1540.4 1816 47.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 1535.8 1823 47.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 1535.4 1829 47.6
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1533.9 1841 47.3
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 1533.5 1832 47.4
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 1532.7 1833 48.8
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 1531.9 1836 47.7
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 1528.8 1836 47.7
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 1524.6 1827 48.6
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 1523.8 1837 47.9
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 1521.1 1854 47.5
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 1520.8 1827 48.4
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 1517.7 1847 47.3
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 1513.4 1826 47.3
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 1512.3 1829 47.2
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 1510.4 1823 47.2
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 1508.0 1817 47.0
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 1504.6 2011 45.2
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 1490.3 1833 46.8
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1473.8 1408 56.9
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 1469.9 1814 47.9
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1440.6 1410 55.4
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 1422.9 1822 46.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1420.2 1424 54.8
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1411.4 1822 45.2
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1407.9 1430 54.3
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 1402.1 2368 38.7
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1396.3 1230 59.5
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1395.6 1215 60.7
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1383.6 1315 56.6
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1327.8 1343 54.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1302.7 1368 53.0
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1246.1 1099 60.1
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1221.5 1155 55.8
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1096.3 1852 37.7
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 5.4e-304 1048.5 1864 36.6
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 6.6e-302 1041.6 1859 36.7
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 7.8e-295 1018.1 1633 38.7
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 9.9e-282 974.5 864 57.6
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 3.5e-271 939.5 1063 48.9
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 1.2e-266 924.5 1246 45.7
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-232 811.6 888 49.8
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 5.8e-213 746.1 1370 37.7
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.8e-207 727.2 1119 39.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 3.5e-194 683.7 1502 31.4
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 5.6e-192 676.4 638 55.5
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.8e-161 575.1 1723 28.1
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-159 568.5 613 51.5
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 6.5e-148 530.0 1791 26.5
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 1.4e-145 522.3 519 54.3
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.3e-132 479.2 326 73.0
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 6.1e-114 417.2 460 50.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.2e-104 386.3 774 34.9
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.4e-102 378.6 540 40.2
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 2.0e-96 359.0 239 71.1
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.1e-83 316.6 748 28.2
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.0e-68 266.9 159 79.9
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.4e-62 245.7 727 29.2
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 7.1e-62 244.2 458 35.4
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 3.1e-57 228.8 258 47.7
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 5.3e-57 228.0 269 46.8
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.5e-56 226.5 462 34.8
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.6e-56 225.7 274 46.4
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.9e-55 222.2 261 46.7
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.1e-51 210.3 671 27.0
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 4.3e-51 208.4 452 37.2
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 2.4e-49 202.6 190 53.7
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 9.0e-49 200.7 245 43.3
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.1e-45 189.5 342 33.3
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.4e-41 176.0 461 29.9
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.6e-37 163.3 168 53.0
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 4.6e-37 161.8 167 52.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.6e-37 161.8 145 53.1
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 5.9e-32 144.8 152 49.3
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.9e-31 142.5 147 49.7
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 6.5e-31 141.4 187 41.2
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.0e-28 134.0 215 40.9
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 3.9e-28 132.1 167 44.3
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 4.8e-26 125.2 122 50.0
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 7.7e-24 117.9 171 39.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.0e-23 117.5 114 52.6
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.7e-21 108.6 118 46.6
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 3.3e-19 102.4 217 33.2
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.0e-15 90.9 157 37.6
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 6.5e-15 88.2 169 33.1
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 6.5e-15 88.2 159 39.0
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.1e-14 87.4 151 35.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.2e-14 84.7 84 46.4
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 9.4e-14 84.3 73 56.2
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 8.0e-13 81.3 53 73.6
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 4.4e-11 75.5 192 27.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 4.4e-11 75.5 83 50.6
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.7e-10 73.6 121 36.4
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 9.1e-09 67.8 71 50.7
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 1.2e-08 67.4 71 46.5
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 8.5e-07 61.2 139 33.1
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.5e-06 60.5 92 40.2
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 2.5e-06 59.7 41 65.9
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 7.2e-06 58.2 41 63.4


User provided reference genes

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