Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.1e-80 303.5 179 100.0
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.0e-51 205.7 153 83.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.2e-45 185.7 157 76.4
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.8e-43 179.9 157 74.5
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 5.0e-38 161.8 160 68.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.9e-37 159.8 158 69.6
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.1e-35 151.8 158 67.7
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.4e-34 148.7 157 65.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.7e-34 148.3 149 67.8
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 6.3e-33 144.8 153 68.0
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 4.1e-32 142.1 154 65.6
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.0e-31 139.8 141 71.6
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 5.9e-31 138.3 158 62.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 7.7e-31 137.9 157 61.1
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.0e-30 137.5 157 61.1
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.0e-30 137.5 157 61.8
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.3e-30 137.1 190 57.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.7e-30 136.7 157 61.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.2e-30 136.3 157 58.6
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.9e-30 136.0 160 63.1
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 1.9e-29 133.3 117 76.9
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 3.2e-29 132.5 149 61.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 5.5e-29 131.7 102 85.3
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 6.1e-28 128.3 142 64.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.8e-27 126.7 149 62.4
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.3e-27 126.3 112 72.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.5e-26 123.6 160 61.2
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.6e-26 122.9 100 83.0
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 2.6e-26 122.9 161 59.6
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 7.4e-26 121.3 100 82.0
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.3e-25 120.6 127 70.1
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-25 120.2 123 72.4
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 2.8e-25 119.4 138 59.4
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 3.7e-25 119.0 166 53.0
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 3.7e-25 119.0 154 60.4
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 4.8e-25 118.6 181 53.0
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 4.8e-25 118.6 166 58.4
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.3e-25 118.2 127 68.5
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.3e-25 118.2 127 68.5
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 6.3e-25 118.2 127 68.5
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 8.2e-25 117.9 97 84.5
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.8e-24 116.7 117 70.1
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.8e-24 116.7 118 69.5
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.8e-24 116.7 159 58.5
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 3.1e-24 115.9 98 80.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 7.0e-24 114.8 159 59.1
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 7.0e-24 114.8 159 60.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.1e-24 114.4 112 72.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.2e-23 114.0 162 57.4
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.2e-23 114.0 109 75.2
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.0e-23 113.2 157 57.3
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 3.5e-23 112.5 153 59.5
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.5e-23 112.1 100 79.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 4.5e-23 112.1 158 58.2
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 4.5e-23 112.1 91 86.8
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 4.5e-23 112.1 91 86.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 7.7e-23 111.3 97 77.3
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.7e-23 111.3 157 56.7
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.0e-22 110.9 154 57.8
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 1.7e-22 110.2 159 57.2
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.9e-22 109.4 96 81.2
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.8e-22 109.0 117 68.4
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 5.0e-22 108.6 99 76.8
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 5.0e-22 108.6 101 76.2
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 6.5e-22 108.2 111 66.7
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.1e-21 107.5 154 55.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.1e-21 107.5 160 53.1
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.5e-21 107.1 118 57.6
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.9e-21 106.7 171 52.6
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 2.5e-21 106.3 101 78.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 4.2e-21 105.5 113 71.7
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 1.6e-20 103.6 162 51.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 6.1e-20 101.7 60 81.7
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.8e-19 100.1 104 67.3
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.0e-19 99.4 155 49.0
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 4.0e-19 99.0 101 71.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 5.2e-19 98.6 101 71.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 5.2e-19 98.6 101 71.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 6.8e-19 98.2 97 77.3
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 6.8e-19 98.2 97 77.3
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.8e-19 97.8 102 63.7
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 8.8e-19 97.8 102 63.7
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.2e-18 97.4 87 77.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.5e-18 97.1 172 43.0
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.0e-18 96.7 102 63.7
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.6e-18 96.3 90 81.1
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.6e-18 96.3 104 66.3
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.4e-18 95.9 105 72.4
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 4.4e-18 95.5 102 62.7
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 5.7e-18 95.1 158 50.0
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.5e-18 94.7 162 51.9
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 9.8e-18 94.4 102 71.6
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 9.8e-18 94.4 102 71.6
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.8e-18 94.4 95 74.7
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.3e-17 94.0 107 59.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.7e-17 93.6 97 74.2
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.7e-17 93.6 102 71.6
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.8e-17 92.8 118 60.2
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 3.7e-17 92.4 102 70.6
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.7e-17 92.4 154 55.8
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 4.8e-17 92.0 158 53.8
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 6.3e-17 91.7 102 61.8
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 8.3e-17 91.3 99 61.6
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.1e-16 90.9 108 67.6
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.1e-16 90.9 96 63.5
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.1e-16 90.9 96 63.5
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.1e-16 90.9 157 48.4
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-16 90.5 97 63.9
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.8e-16 90.1 95 64.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 2.4e-16 89.7 152 48.0
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.1e-16 89.4 95 64.2
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 4.1e-16 89.0 100 62.0
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 4.1e-16 89.0 100 62.0
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.1e-16 89.0 100 72.0
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 9.1e-16 87.8 95 68.4
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.2e-15 87.4 128 53.9
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 2.0e-15 86.7 174 45.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 3.5e-15 85.9 102 60.8
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 4.5e-15 85.5 177 46.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.5e-15 85.5 105 60.0
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-14 84.3 99 57.6
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.0e-14 84.3 99 57.6
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.3e-14 84.0 142 47.9
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.9e-14 82.8 95 66.3
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.9e-14 82.8 101 66.3
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 3.8e-14 82.4 96 62.5
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.0e-14 82.0 154 48.1
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.9e-13 80.1 95 65.3
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.5e-13 79.7 129 55.0
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 2.1e-12 76.6 95 60.0
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.0e-12 74.7 114 55.3
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.4e-11 73.9 118 55.1
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 8.8e-11 71.2 116 51.7
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 2.0e-10 70.1 118 54.2
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.7e-10 68.6 104 56.7
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.9e-09 65.5 75 65.3
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 6.3e-09 65.1 115 47.8
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.3e-09 64.7 85 49.4
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 8.3e-09 64.7 107 53.3
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 1.4e-08 63.9 61 75.4
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.4e-08 63.9 63 69.8
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.4e-08 63.9 145 41.4
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.4e-08 63.9 96 56.2
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.1e-08 62.8 63 69.8
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 9.1e-08 61.2 95 51.6
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 9.1e-08 61.2 95 51.6
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 4.5e-07 58.9 149 37.6
Mapoly0031s0147 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.7e-06 57.0 80 58.8
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 1.7e-06 57.0 75 52.0
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 2.3e-06 56.6 102 48.0
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.9e-06 56.2 63 65.1
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 2.9e-06 56.2 103 56.3
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.8e-06 55.8 63 58.7


User provided reference genes

Program Settings