Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 3.7e-191 671.4 339 100.0
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 9.1e-174 613.6 334 91.0
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.1
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.4e-173 611.7 339 89.7
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 5.9e-173 610.9 334 90.7
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 1.0e-172 610.1 339 89.4
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.4e-171 606.3 333 90.4
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.4e-171 606.3 330 90.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 2.5e-171 605.5 332 90.1
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.5e-171 605.5 335 89.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 4.2e-171 604.7 331 89.4
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 7.2e-171 604.0 332 89.5
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 1.2e-170 603.2 333 90.4
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 1.2e-170 603.2 333 90.4
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.1e-170 602.4 333 88.9
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 2.1e-170 602.4 332 89.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.7e-170 602.1 330 90.3
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 2.7e-170 602.1 332 88.9
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.0e-169 600.1 339 88.8
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.4e-169 599.7 333 88.6
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 1.8e-169 599.4 334 88.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 2.3e-169 599.0 342 86.8
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 2.3e-169 599.0 333 89.5
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 2.3e-169 599.0 333 89.5
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 3.0e-169 598.6 332 88.6
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 5.1e-169 597.8 333 88.6
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 5.1e-169 597.8 333 89.2
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.7e-169 597.4 332 88.0
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 8.8e-169 597.0 332 88.6
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 8.8e-169 597.0 332 88.0
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 8.8e-169 597.0 339 87.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 1.1e-168 596.7 332 88.3
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 1.1e-168 596.7 332 88.0
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 1.1e-168 596.7 339 87.6
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 1.5e-168 596.3 332 88.0
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 2.6e-168 595.5 332 88.0
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 2.6e-168 595.5 334 87.7
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.6e-168 595.5 332 87.7
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 2.6e-168 595.5 339 87.6
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 3.3e-168 595.1 332 87.7
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 3.3e-168 595.1 332 87.7
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.4e-168 594.7 332 87.3
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 5.7e-168 594.3 339 87.0
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 5.7e-168 594.3 337 86.9
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 5.7e-168 594.3 339 86.4
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 5.7e-168 594.3 332 87.3
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 7.4e-168 594.0 339 87.3
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 9.7e-168 593.6 332 88.6
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.3e-167 593.2 337 86.4
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.3e-167 593.2 332 87.3
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.7e-167 592.8 332 87.3
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 2.2e-167 592.4 339 86.1
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 2.8e-167 592.0 339 86.4
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 88.0
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 86.7
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 2.8e-167 592.0 332 87.0
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.8e-167 591.3 341 87.1
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.3e-167 590.9 332 86.7
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 6.3e-167 590.9 341 87.1
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 6.3e-167 590.9 341 87.1
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 6.3e-167 590.9 332 86.7
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 6.3e-167 590.9 338 86.4
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 6.3e-167 590.9 339 85.8
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 8.2e-167 590.5 332 87.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 332 86.7
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 332 86.7
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.1e-166 590.1 332 86.7
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.1e-166 590.1 376 80.3
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-166 589.7 339 85.5
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 5.3e-166 587.8 333 87.4
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 9.1e-166 587.0 334 87.7
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 9.1e-166 587.0 332 86.7
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.5e-165 586.3 332 86.7
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 2.0e-165 585.9 332 86.7
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-165 585.5 341 85.9
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.6e-165 585.5 342 86.0
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 7.7e-165 583.9 332 85.8
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.7e-164 582.8 332 84.9
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 1.4e-163 579.7 325 88.3
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.2e-163 578.6 332 85.5
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 2.7e-162 575.5 332 84.9
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 3.6e-162 575.1 352 82.1
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 4.7e-162 574.7 309 91.6
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.9e-161 571.6 333 84.4
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 5.2e-161 571.2 333 84.1
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 8.8e-161 570.5 336 83.6
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 84.1
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 84.1
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 8.8e-161 570.5 333 84.4
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.1e-160 570.1 333 84.4
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 2.0e-160 569.3 333 83.8
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 2.0e-160 569.3 333 84.1
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.0e-160 569.3 309 90.6
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 2.6e-160 568.9 333 83.8
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 4.4e-160 568.2 333 83.8
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 4.4e-160 568.2 333 83.8
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 4.4e-160 568.2 319 88.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 4.4e-160 568.2 332 83.7
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 7.4e-160 567.4 333 83.8
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.7e-159 566.2 332 82.8
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 2.2e-159 565.8 333 83.8
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.8e-159 565.5 329 84.5
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 3.7e-159 565.1 333 83.5
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 4.8e-159 564.7 333 83.5
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 1.4e-158 563.1 333 83.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 1.4e-158 563.1 333 83.2
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 3.1e-158 562.0 333 83.5
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 4.1e-158 561.6 323 84.5
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 4.1e-158 561.6 313 88.5
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 9.1e-158 560.5 348 80.5
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.5e-157 558.1 322 87.0
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 3.8e-156 555.1 339 79.9
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 4.2e-155 551.6 313 85.9
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 5.5e-155 551.2 332 83.7
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.2e-155 550.8 333 84.1
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.7e-154 548.9 313 86.6
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 6.7e-153 544.3 337 78.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.7e-151 539.7 314 84.4
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 8.2e-151 537.3 334 76.6
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.4e-150 536.6 332 76.8
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 2.9e-148 528.9 382 73.6
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 3.8e-148 528.5 332 80.4
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.5e-147 526.6 334 76.0
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.4e-147 523.9 334 75.4
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 5.2e-145 518.1 334 74.6
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.6e-144 515.8 417 66.7
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-142 509.6 359 73.8
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 6.5e-140 501.1 295 83.7
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 2.2e-135 486.1 271 88.2
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 4.1e-134 481.9 332 76.2
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.0e-134 481.1 262 90.8
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 7.0e-134 481.1 262 90.8
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 2.7e-133 479.2 262 89.7
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 4.5e-133 478.4 320 72.5
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 7.8e-125 451.1 332 71.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 1.7e-124 449.9 332 70.8
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 1.4e-121 440.3 341 66.9
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.9e-116 422.2 238 86.6
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.8e-113 413.3 251 78.9
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 8.9e-113 411.0 311 63.3
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 2.1e-109 399.8 251 79.3
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 9.5e-107 391.0 252 74.6
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 9.9e-104 380.9 216 85.6
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 6.0e-101 371.7 325 59.1
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 6.6e-100 368.2 317 55.8
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.7e-53 213.4 128 81.2
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.3e-44 183.7 163 62.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 7.0e-33 145.6 179 50.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 2.3e-28 130.6 74 83.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 4.0e-28 129.8 79 78.5
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 1.7e-26 124.4 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 7.7e-24 115.5 73 76.7
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 2.0e-19 100.9 82 63.4
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 4.1e-17 93.2 56 82.1
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 6.1e-13 79.3 99 47.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 6.8e-12 75.9 42 81.0
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 4.4e-11 73.2 57 68.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 9.2e-09 65.5 100 42.0
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 6.6e-07 59.3 60 56.7
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 6.6e-07 59.3 60 56.7
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 7.3e-06 55.8 125 35.2


User provided reference genes

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