Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 6.6e-139 497.3 238 100.0
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 6.7e-99 364.4 235 74.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.0e-86 323.9 188 81.9
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.3e-86 323.6 189 83.1
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.7e-81 305.4 179 79.3
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 8.2e-81 304.3 182 76.9
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 2.0e-79 299.7 179 77.1
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.7e-79 299.3 181 76.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 4.5e-79 298.5 179 76.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.0e-78 297.4 179 76.5
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.0e-78 297.4 179 76.5
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 1.3e-78 297.0 189 76.2
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.5e-78 294.7 180 78.9
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.5e-78 294.7 178 77.0
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 8.5e-78 294.3 179 76.0
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.5e-77 292.7 178 75.8
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 4.2e-77 292.0 179 76.0
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.4e-77 290.8 228 62.7
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.2e-76 290.4 180 75.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 1.6e-76 290.0 179 75.4
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 3.6e-76 288.9 181 75.1
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 6.1e-76 288.1 199 69.8
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 8.0e-76 287.7 194 69.1
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 8.0e-76 287.7 184 73.9
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.0e-76 287.7 188 71.3
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 8.0e-76 287.7 178 78.1
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 8.0e-76 287.7 190 70.0
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.0e-75 287.3 187 73.8
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.0e-75 287.3 180 72.2
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.4e-75 287.0 179 74.3
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 1.8e-75 286.6 179 74.3
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 1.8e-75 286.6 192 70.3
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 1.8e-75 286.6 183 73.8
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.8e-75 286.6 180 73.3
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.0e-75 285.8 179 73.7
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.2e-75 285.0 193 73.1
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 8.8e-75 284.3 181 74.6
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 1.5e-74 283.5 181 71.8
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.5e-74 283.5 186 72.0
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 2.6e-74 282.7 192 69.8
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 3.4e-74 282.3 210 67.6
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 3.4e-74 282.3 180 71.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 4.4e-74 282.0 179 72.1
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 5.7e-74 281.6 188 70.7
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.7e-74 281.6 179 71.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.8e-74 280.8 179 71.5
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.3e-73 280.4 183 71.0
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 1.3e-73 280.4 189 68.8
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.7e-73 280.0 180 70.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.2e-73 279.6 185 70.8
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.8e-73 279.3 198 66.2
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.8e-73 278.5 180 70.0
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 6.3e-73 278.1 180 69.4
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.3e-73 277.7 185 70.8
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 1.1e-72 277.3 180 72.2
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 1.4e-72 276.9 184 71.2
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.8e-72 276.6 180 72.8
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 3.1e-72 275.8 183 68.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 5.4e-72 275.0 184 71.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 1.2e-71 273.9 188 64.9
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 1.6e-71 273.5 185 70.3
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 2.0e-71 273.1 186 70.4
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.7e-71 272.7 190 66.3
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 2.7e-71 272.7 180 68.3
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 3.5e-71 272.3 186 70.4
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 4.5e-71 271.9 190 66.8
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 7.7e-71 271.2 179 69.8
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 7.7e-71 271.2 181 68.0
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 1.0e-70 270.8 179 70.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 2.3e-70 269.6 185 68.1
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 2.5e-69 266.2 193 68.4
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.2e-68 263.8 154 78.6
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 4.7e-68 261.9 183 65.6
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 1.0e-67 260.8 289 50.2
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 6.8e-67 258.1 189 65.6
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 6.8e-67 258.1 189 65.6
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 2.0e-66 256.5 189 66.1
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 2.6e-66 256.1 181 69.1
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.4e-66 255.4 188 61.7
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.4e-66 255.4 188 61.7
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 5.7e-66 255.0 188 63.8
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.4e-64 250.4 189 63.0
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 4.1e-64 248.8 254 52.0
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.4e-64 248.4 189 64.0
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 5.4e-64 248.4 188 61.7
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.0e-64 248.1 180 66.7
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 9.2e-64 247.7 185 67.0
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.2e-63 247.3 183 66.7
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.7e-63 246.1 183 66.1
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 3.5e-63 245.7 183 65.6
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-63 245.7 178 62.4
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 7.8e-63 244.6 181 64.6
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.0e-62 244.2 181 64.6
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.3e-62 243.8 183 66.7
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.3e-62 243.8 184 63.0
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.7e-62 243.4 183 66.7
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 3.8e-62 242.3 134 82.1
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.5e-61 240.4 180 62.2
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.9e-61 240.0 182 64.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 4.3e-61 238.8 169 66.3
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 5.6e-61 238.4 182 63.2
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 5.6e-61 238.4 183 65.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 5.6e-61 238.4 182 63.2
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 5.6e-61 238.4 183 65.0
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 9.5e-61 237.7 183 65.0
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-60 236.5 182 63.7
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 2.1e-60 236.5 226 56.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 2.1e-60 236.5 182 64.3
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.1e-60 236.5 178 65.7
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 4.7e-60 235.3 182 62.6
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 4.7e-60 235.3 182 62.6
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 4.7e-60 235.3 157 70.7
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.2e-58 230.7 160 68.1
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 2.6e-58 229.6 189 58.7
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.7e-57 225.7 179 63.1
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.7e-57 225.7 179 59.8
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.1e-56 224.2 193 59.1
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 5.4e-56 221.9 272 45.6
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 4.6e-55 218.8 201 58.2
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.9e-54 215.7 135 73.3
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 5.6e-53 211.8 187 54.0
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 5.6e-53 211.8 185 56.8
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 1.6e-52 210.3 117 76.1
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 8.0e-52 208.0 196 56.1
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-51 206.5 154 66.9
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.2e-50 204.1 180 57.2
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 1.2e-50 204.1 163 63.2
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.5e-50 203.8 168 57.7
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 1.5e-50 203.8 192 54.2
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 5.8e-50 201.8 152 63.8
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 7.5e-50 201.4 186 48.9
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.7e-49 200.3 188 53.2
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.9e-49 199.5 178 51.1
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 4.9e-49 198.7 184 53.3
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 7.0e-48 194.9 182 54.9
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 4.6e-47 192.2 194 46.9
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 6.0e-47 191.8 179 53.6
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 1.9e-45 186.8 164 54.9
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 7.3e-45 184.9 181 53.6
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 2.1e-44 183.3 137 65.7
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 2.6e-42 176.4 144 61.8
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 9.9e-42 174.5 92 80.4
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.7e-38 163.7 183 43.7
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 3.1e-35 152.9 180 41.1
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 4.0e-35 152.5 134 59.7
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.0e-34 150.2 210 42.4
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 4.2e-32 142.5 142 52.1
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.1e-29 134.4 179 43.6
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.1e-29 134.4 179 43.6
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.1e-29 134.4 186 41.9
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.9e-29 133.7 183 42.1
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.6e-28 129.4 183 42.1
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.7e-25 120.6 89 60.7
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 7.1e-24 115.2 88 60.2
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 9.0e-19 98.2 90 54.4
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.1e-13 81.3 155 36.8
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 4.5e-10 69.3 39 74.4
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 2.2e-09 67.0 147 27.9
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 2.5e-08 63.5 108 34.3
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 7.1e-08 62.0 51 47.1
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 1.6e-07 60.8 160 28.1
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 4.6e-07 59.3 48 64.6


User provided reference genes

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