Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g15957 Utricularia gibba HOM05D004749 ORTHO05D005995 7.8e-74 280.8 190 100.0
Migut.A01124 Erythranthe guttata HOM05D004749 ORTHO05D005995 6.0e-58 228.0 150 78.7
CSS0022958 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 6.6e-57 224.6 157 77.7
Actinidia13350 Actinidia chinensis HOM05D004749 ORTHO05D005995 8.7e-57 224.2 157 74.5
TAR362G1144 Trochodendron aralioides HOM05D004749 ORTHO05D005995 3.3e-56 222.2 157 73.2
Cc02_g31810 Coffea canephora HOM05D004749 ORTHO05D005995 5.6e-56 221.5 192 63.0
Hma1.2p1_1168F.1_g263150 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.6e-55 219.9 147 77.6
Hma1.2p1_4126F.1_g338340 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.6e-55 219.9 147 77.6
Sopen08g029650 Solanum pennellii HOM05D004749 ORTHO05D005995 2.8e-55 219.2 158 72.8
PGSC0003DMG400012333 Solanum tuberosum HOM05D004749 ORTHO05D005995 2.8e-55 219.2 158 72.8
Hma1.2p1_1400F.1_g280890 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 4.8e-55 218.4 160 73.8
Nitab4.5_0001220g0090 Nicotiana tabacum HOM05D004749 ORTHO05D005995 4.8e-55 218.4 149 77.2
Solyc08g081330.4 Solanum lycopersicum HOM05D004749 ORTHO05D005995 4.8e-55 218.4 158 72.8
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 8.1e-55 217.6 157 82.2
Hma1.2p1_0078F.1_g039880 Hydrangea macrophylla HOM05D004749 ORTHO05D005995 1.4e-54 216.9 160 73.1
Nitab4.5_0006920g0020 Nicotiana tabacum HOM05D004749 ORTHO05D005995 1.4e-54 216.9 149 77.2
SalBow1G5780 Salvia bowleyana HOM05D004749 ORTHO05D005995 1.4e-54 216.9 147 81.6
PGR031G3778 Punica granatum HOM05D004749 ORTHO05D005995 2.4e-54 216.1 155 80.0
PSO210G5482 Papaver somniferum HOM05D004749 ORTHO05D005995 5.3e-54 214.9 159 73.6
PSO210G7457 Papaver somniferum HOM05D004749 ORTHO05D005995 5.3e-54 214.9 159 73.6
TAR633G2406 Trochodendron aralioides HOM05D004749 ORTHO05D005995 6.9e-54 214.5 147 76.9
Oeu061088.1 Olea europaea HOM05D004749 ORTHO05D005995 1.2e-53 213.8 151 74.2
Aqoxy1G00958 Aquilegia oxysepala HOM05D004749 ORTHO05D005995 2.0e-53 213.0 190 68.9
MSTRG.12116 Avicennia marina HOM05D004749 ORTHO05D005995 2.0e-53 213.0 160 74.4
QL04p048178 Quercus lobata HOM05D004749 ORTHO05D005995 2.6e-53 212.6 149 73.2
QL06p012791 Quercus lobata HOM05D004749 ORTHO05D005995 2.6e-53 212.6 157 70.7
Sabra08G0077900 Salix brachista HOM05D004749 ORTHO05D005995 3.4e-53 212.2 157 70.1
Potri.008G103000 Populus trichocarpa HOM05D004749 ORTHO05D005995 4.4e-53 211.8 157 69.4
Manes.09G084300 Manihot esculenta HOM05D004749 ORTHO05D005995 5.8e-53 211.5 147 78.9
Rhsim10G0104300 Rhododendron simsii HOM05D004749 ORTHO05D005995 5.8e-53 211.5 146 83.6
CAN.G532.7 Capsicum annuum HOM05D004749 ORTHO05D005995 7.6e-53 211.1 190 65.8
Peaxi162Scf00074g02033 Petunia axillaris HOM05D004749 ORTHO05D005995 7.6e-53 211.1 146 84.9
HanXRQChr17g0569351 Helianthus annuus HOM05D004749 ORTHO05D005995 9.9e-53 210.7 145 77.9
Duzib052G0525 Durio zibethinus HOM05D004749 ORTHO05D005995 1.7e-52 209.9 147 73.5
Potri.010G148000 Populus trichocarpa HOM05D004749 ORTHO05D005995 2.2e-52 209.5 158 69.0
RcHm_v2.0_Chr4g0411531 Rosa chinensis HOM05D004749 ORTHO05D005995 2.2e-52 209.5 159 68.6
Ciclev10005025m.g Citrus clementina HOM05D004749 ORTHO05D005995 2.9e-52 209.1 160 68.1
Duzib151G0494 Durio zibethinus HOM05D004749 ORTHO05D005995 2.9e-52 209.1 147 72.8
ClCG11G010380 Citrullus lanatus HOM05D004749 ORTHO05D005995 3.8e-52 208.8 192 64.1
FvH4_4g12660 Fragaria vesca HOM05D004749 ORTHO05D005995 6.4e-52 208.0 159 67.9
FAN07G1280 Fragaria x ananassa HOM05D004749 ORTHO05D005995 6.4e-52 208.0 159 67.9
FAN12G1239 Fragaria x ananassa HOM05D004749 ORTHO05D005995 6.4e-52 208.0 159 67.9
Sp7g19970 Schrenkiella parvula HOM05D004749 ORTHO05D005995 6.4e-52 208.0 159 72.3
CANSAT11G0071 Cannabis sativa HOM05D004749 ORTHO05D005995 1.1e-51 207.2 150 72.7
FAN22G0862 Fragaria x ananassa HOM05D004749 ORTHO05D005995 1.1e-51 207.2 159 67.9
Cpa.g.sc106.97 Carica papaya HOM05D004749 ORTHO05D005995 1.4e-51 206.8 145 74.5
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 1.4e-51 206.8 157 73.9
MELO3C008635.2 Cucumis melo HOM05D004749 ORTHO05D005995 1.9e-51 206.5 158 68.4
Lalb_Chr07g0181981 Lupinus albus HOM05D004749 ORTHO05D005995 1.9e-51 206.5 158 70.3
GSVIVG01034965001 Vitis vinifera HOM05D004749 ORTHO05D005995 1.9e-51 206.5 148 74.3
FAN17G3131 Fragaria x ananassa HOM05D004749 ORTHO05D005995 2.4e-51 206.1 157 68.2
Lsat_1_v5_gn_9_58140 Lactuca sativa HOM05D004749 ORTHO05D005995 2.4e-51 206.1 152 73.0
Hund18596 Selenicereus undatus HOM05D004749 ORTHO05D005995 2.4e-51 206.1 145 82.1
Thecc.04G246100 Theobroma cacao HOM05D004749 ORTHO05D005995 2.4e-51 206.1 147 71.4
ECA246G2874 Erigeron canadensis HOM05D004749 ORTHO05D005995 7.1e-51 204.5 157 72.6
TWI73G0343 Tripterygium wilfordii HOM05D004749 ORTHO05D005995 7.1e-51 204.5 155 67.7
CDE02G1224 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 9.3e-51 204.1 156 71.2
CsaV3_2G009980 Cucumis sativus L. HOM05D004749 ORTHO05D005995 9.3e-51 204.1 161 67.1
Glyma.17G035700 Glycine max HOM05D004749 ORTHO05D005995 9.3e-51 204.1 156 72.4
MBI19_g03265_MAGBIO Magnolia biondii HOM05D004749 ORTHO05D005995 9.3e-51 204.1 147 70.7
DCAR_026992 Daucus carota HOM05D004749 ORTHO05D005995 1.2e-50 203.8 146 81.5
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 1.6e-50 203.4 147 70.7
Gohir.A09G223200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 2.1e-50 203.0 147 70.1
Gohir.D09G225200 Gossypium hirsutum HOM05D004749 ORTHO05D005995 2.1e-50 203.0 147 70.1
Gorai.006G246700 Gossypium raimondii HOM05D004749 ORTHO05D005995 2.1e-50 203.0 147 70.1
MD16G1150500 Malus domestica HOM05D004749 ORTHO05D005995 2.7e-50 202.6 159 66.7
Nn3g21759 Nelumbo nucifera HOM05D004749 ORTHO05D005995 2.7e-50 202.6 158 67.7
Phvul.003G116600 Phaseolus vulgaris HOM05D004749 ORTHO05D005995 3.5e-50 202.2 157 74.5
Sabra10G0114100 Salix brachista HOM05D004749 ORTHO05D005995 3.5e-50 202.2 158 65.8
Sed0018873 Sechium edule HOM05D004749 ORTHO05D005995 3.5e-50 202.2 157 66.9
arahy.Tifrunner.gnm1.ann1.CI16ME Arachis hypogaea HOM05D004749 ORTHO05D005995 4.6e-50 201.8 147 69.4
arahy.Tifrunner.gnm1.ann1.YK8CX2 Arachis hypogaea HOM05D004749 ORTHO05D005995 4.6e-50 201.8 147 69.4
Actinidia14251 Actinidia chinensis HOM05D004749 ORTHO05D005995 6.0e-50 201.4 116 87.1
Carub.0007s1960 Capsella rubella HOM05D004749 ORTHO05D005995 6.0e-50 201.4 159 64.8
Medtr1g100240 Medicago truncatula HOM05D004749 ORTHO05D005995 6.0e-50 201.4 147 70.7
EL10Ac7g16373 Beta vulgaris HOM05D004749 ORTHO05D005995 7.9e-50 201.1 159 73.6
CiPaw.02G073100 Carya illinoinensis HOM05D004749 ORTHO05D005995 7.9e-50 201.1 147 69.4
Glyma.07G237800 Glycine max HOM05D004749 ORTHO05D005995 1.0e-49 200.7 156 73.1
Atru.chr4.3050 Acer truncatum HOM05D004749 ORTHO05D005995 1.7e-49 199.9 147 71.4
AUR62005917 Chenopodium quinoa HOM05D004749 ORTHO05D005995 2.3e-49 199.5 150 76.7
Psat6g193640 Pisum sativum HOM05D004749 ORTHO05D005995 2.3e-49 199.5 147 70.1
Cfa014134 Carpinus fangiana HOM05D004749 ORTHO05D005995 3.0e-49 199.1 157 66.2
MD12G1007400 Malus domestica HOM05D004749 ORTHO05D005995 3.0e-49 199.1 159 65.4
Nn4g25537 Nelumbo nucifera HOM05D004749 ORTHO05D005995 3.0e-49 199.1 158 68.4
VMungo0720G2504 Vigna mungo HOM05D004749 ORTHO05D005995 3.0e-49 199.1 147 68.7
THA.LOC104827101 Tarenaya hassleriana HOM05D004749 ORTHO05D005995 3.9e-49 198.7 190 63.2
CiPaw.01G136300 Carya illinoinensis HOM05D004749 ORTHO05D005995 6.6e-49 198.0 149 67.8
AUR62028146 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.6e-49 198.0 142 81.0
AUR62041770 Chenopodium quinoa HOM05D004749 ORTHO05D005995 6.6e-49 198.0 142 81.0
MD14G1004700 Malus domestica HOM05D004749 ORTHO05D005995 6.6e-49 198.0 159 64.8
Manes.08G074300 Manihot esculenta HOM05D004749 ORTHO05D005995 6.6e-49 198.0 157 74.5
Prupe.1G114400 Prunus persica HOM05D004749 ORTHO05D005995 6.6e-49 198.0 149 67.1
Thhalv10025484m.g Eutrema salsugineum HOM05D004749 ORTHO05D005995 1.1e-48 197.2 159 74.8
Lj4g0011402 Lotus japonicus HOM05D004749 ORTHO05D005995 1.1e-48 197.2 147 68.0
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 3.3e-48 195.7 147 69.4
AT4G21800 Arabidopsis thaliana HOM05D004749 ORTHO05D005995 9.6e-48 194.1 159 69.8
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.6e-47 193.4 147 69.4
AL7G32130 Arabidopsis lyrata HOM05D004749 ORTHO05D005995 2.1e-47 193.0 159 69.2
BolC1t01536H Brassica oleracea HOM05D004749 ORTHO05D005995 2.1e-47 193.0 158 73.4
Haze_01330 Corylus avellana HOM05D004749 ORTHO05D005995 2.1e-47 193.0 147 69.4
Eucgr.K01628 Eucalyptus grandis HOM05D004749 ORTHO05D005995 3.6e-47 192.2 147 76.2
HPP92_008928 Vanilla planifolia HOM05D004749 ORTHO05D005995 4.8e-47 191.8 146 67.8
Zm00001eb395880 Zea mays HOM05D004749 ORTHO05D005995 4.8e-47 191.8 192 61.5
BcaC09g51199 Brassica carinata HOM05D004749 ORTHO05D005995 6.2e-47 191.4 158 73.4
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 6.2e-47 191.4 158 73.4
Sc17g0002650 Simmondsia chinensis HOM05D004749 ORTHO05D005995 6.2e-47 191.4 147 75.5
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 1.1e-46 190.7 158 72.2
BraA01t01257Z Brassica rapa HOM05D004749 ORTHO05D005995 1.1e-46 190.7 158 72.2
CARHR228550 Cardamine hirsuta HOM05D004749 ORTHO05D005995 1.8e-46 189.9 158 69.0
BcaNung02248 Brassica carinata HOM05D004749 ORTHO05D005995 5.3e-46 188.3 147 76.2
Lju912A2T64 Lonicera japonica HOM05D004749 ORTHO05D005995 3.4e-45 185.7 157 65.6
COL.COLO4_15791 Corchorus olitorius HOM05D004749 ORTHO05D005995 7.6e-45 184.5 142 69.7
Haze_22859 Corylus avellana HOM05D004749 ORTHO05D005995 7.6e-45 184.5 157 66.9
SalBow7G1269 Salvia bowleyana HOM05D004749 ORTHO05D005995 8.4e-44 181.0 101 89.1
Dinv15143 Davidia involucrata HOM05D004749 ORTHO05D005995 1.9e-43 179.9 101 87.1
SEGI_28650 Sequoiadendron giganteum HOM05D004749 ORTHO05D005995 2.4e-43 179.5 142 63.4
ATR0693G032 Amborella trichopoda HOM05D004749 ORTHO05D005995 3.5e-42 175.6 146 71.2
vmacro12071 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 1.0e-41 174.1 172 57.0
Psat1g194120 Pisum sativum HOM05D002906 ORTHO05D003211 3.0e-41 172.6 143 62.9
HanXRQChr10g0314441 Helianthus annuus HOM05D004749 ORTHO05D005995 4.3e-40 168.7 150 65.3
vmacro15173 Vaccinium macrocarpon HOM05D004749 ORTHO05D005995 3.7e-39 165.6 188 52.1
BraA08t33522Z Brassica rapa HOM05D004749 ORTHO05D005995 1.5e-37 160.2 147 59.9
Lj6C561G5 Lonicera japonica HOM05D004749 ORTHO05D005995 2.0e-37 159.8 104 76.9
AagrBONN_evm.TU.Sc2ySwM_368.1659 Anthoceros agrestis HOM05D004749 ORTHO05D005995 2.6e-37 159.5 159 56.0
Aa31LG6G3810 Aethionema arabicum HOM05D004749 ORTHO05D005995 3.4e-37 159.1 101 75.2
Pp3c8_16870 Physcomitrium patens HOM05D004749 ORTHO05D005995 1.7e-36 156.8 141 56.0
CSS0044945 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 1.2e-34 150.6 149 60.4
SMO271G0158 Selaginella moellendorffii HOM05D004749 ORTHO05D005995 1.2e-34 150.6 117 64.1
Mapoly0080s0030 Marchantia polymorpha HOM05D004749 ORTHO05D005995 1.6e-34 150.2 145 49.7
DCAR_030456 Daucus carota HOM05D004749 ORTHO05D005995 1.9e-32 143.3 153 52.3
Lj6A693T62 Lonicera japonica HOM05D004749 ORTHO05D005995 5.7e-32 141.7 114 78.1
CBR_g44475 Chara braunii HOM05D004749 ORTHO05D005995 1.3e-31 140.6 101 66.3
HanXRQChr08g0212681 Helianthus annuus HOM05D004749 ORTHO05D005995 3.7e-31 139.0 87 78.2
PRCOL_00000431 Prasinoderma coloniale HOM05D004749 ORTHO05D005995 8.2e-31 137.9 116 56.9
CSS0038246 Camellia sinensis var. sinensis HOM05D004749 ORTHO05D005995 7.6e-29 131.3 126 60.3
Cre06.g267150 Chlamydomonas reinhardtii HOM05D004749 ORTHO05D005995 2.9e-28 129.4 116 53.4
Haze_27364 Corylus avellana HOM05D004749 ORTHO05D005995 1.2e-26 124.0 110 54.5
MD13G1150100 Malus domestica HOM05D004749 ORTHO05D005995 2.1e-26 123.2 115 60.0
BcaC01g00741 Brassica carinata HOM05D004749 ORTHO05D005995 2.7e-26 122.9 133 52.6
MCO13G184 Micromonas commoda HOM05D004749 ORTHO05D005995 7.9e-26 121.3 140 47.9
A08p15460 Brassica napus HOM05D004749 ORTHO05D005995 2.3e-25 119.8 111 59.5
BolC3t20652H Brassica oleracea HOM05D004749 ORTHO05D005995 2.8e-23 112.8 140 47.9
Cfa026321 Carpinus fangiana HOM05D004749 ORTHO05D005995 2.8e-23 112.8 135 44.4
HPP92_008940 Vanilla planifolia HOM05D004749 ORTHO05D005995 3.1e-22 109.4 67 79.1
C03p83720 Brassica napus HOM05D004749 ORTHO05D005995 1.3e-20 104.0 148 43.9
Psat7g201920 Pisum sativum HOM05D000835 ORTHO05D004825 1.4e-19 100.5 83 65.1
CARHR228600 Cardamine hirsuta HOM05D004749 ORTHO05D043482 9.7e-16 87.8 55 78.2
TAR374G0424 Trochodendron aralioides HOM05D000090 ORTHO05D001322 5.0e-12 75.5 50 74.0
PSO063G4024 Papaver somniferum HOM05D004749 ORTHO05D005995 5.5e-11 72.0 66 57.6
Hma1.2p1_0013F.1_g008320 Hydrangea macrophylla HOM05D004749 ORTHO05D043482 1.6e-10 70.5 44 81.8
CDE08G0804 Ceratophyllum demersum HOM05D004749 ORTHO05D034260 3.6e-10 69.3 109 50.5
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.8e-06 57.0 32 84.4
arahy.Tifrunner.gnm1.ann1.08UNPH Arachis hypogaea HOM05D004749 ORTHO05D005995 3.1e-06 56.2 32 78.1
arahy.Tifrunner.gnm1.ann1.3R6CDR Arachis hypogaea HOM05D004749 ORTHO05D005995 3.1e-06 56.2 32 78.1
MELO3C012760.2 Cucumis melo HOM05D004749 ORTHO05D034260 9.1e-06 54.7 63 52.4


User provided reference genes

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