Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.4e-113 413.3 258 100.0
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.3e-55 220.7 254 60.6
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.9e-55 219.5 254 60.2
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.8e-55 219.2 250 56.0
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.8e-52 210.3 256 60.9
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 8.7e-52 208.0 255 59.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 7.4e-51 204.9 258 57.8
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 2.1e-50 203.4 257 47.1
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 8.2e-50 201.4 229 61.1
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.4e-49 200.7 259 56.8
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.4e-49 200.7 259 56.8
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.4e-49 200.7 259 57.1
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 5.3e-49 198.7 257 58.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.3e-49 198.7 257 57.6
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.0e-48 196.8 205 52.7
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.6e-48 196.4 261 57.9
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 5.9e-48 195.3 253 54.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.2e-47 193.4 207 65.7
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 2.9e-47 193.0 257 57.2
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 5.0e-47 192.2 253 47.4
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.1e-46 191.0 226 62.4
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.4e-46 190.7 263 51.7
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.4e-46 190.7 257 58.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.9e-46 190.3 220 61.4
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.9e-46 190.3 263 51.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 1.9e-46 190.3 270 53.0
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.5e-46 189.9 258 46.9
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 3.2e-46 189.5 263 49.4
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.6e-45 187.2 220 59.5
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 1.6e-45 187.2 257 58.0
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.6e-45 187.2 263 55.5
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.6e-45 187.2 257 54.9
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 2.1e-45 186.8 206 62.1
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 2.1e-45 186.8 261 55.9
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.7e-45 186.4 263 51.3
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.5e-45 186.0 258 57.0
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 4.6e-45 185.7 202 62.9
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.6e-45 185.7 257 45.5
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.6e-45 185.7 264 45.1
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 7.9e-45 184.9 206 63.1
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 7.9e-45 184.9 256 58.2
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.8e-44 183.7 242 45.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 3.0e-44 183.0 219 59.4
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 3.0e-44 183.0 257 56.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.9e-44 182.6 220 48.6
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 6.7e-44 181.8 239 45.6
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 6.7e-44 181.8 231 58.9
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 4.3e-43 179.1 235 58.3
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.3e-43 179.1 254 55.5
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 4.3e-43 179.1 229 57.6
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 7.4e-43 178.3 255 45.5
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 9.7e-43 177.9 140 69.3
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.3e-42 177.6 257 45.1
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.6e-42 177.2 260 55.4
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.2e-42 176.8 245 54.3
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 2.8e-42 176.4 235 57.9
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 2.8e-42 176.4 235 57.9
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.7e-42 176.0 254 53.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 8.2e-42 174.9 218 59.6
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 8.2e-42 174.9 255 51.8
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.1e-41 174.5 257 57.2
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.4e-41 174.1 218 59.6
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.8e-41 173.7 277 52.3
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 5.3e-41 172.2 234 56.8
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 9.0e-41 171.4 259 56.0
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.0e-40 170.2 235 57.0
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 257 52.5
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.7e-40 168.3 268 45.9
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 230 59.6
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.7e-39 167.2 258 41.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.9e-39 166.4 234 56.8
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.9e-39 166.4 257 52.9
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 5.0e-39 165.6 257 55.3
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 6.5e-39 165.2 214 54.7
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.1e-38 164.5 237 43.9
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.4e-38 164.1 263 41.8
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.4e-38 164.1 209 46.4
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 2.5e-38 163.3 205 56.6
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.2e-38 162.5 268 42.5
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 5.5e-38 162.2 264 42.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 7.2e-38 161.8 280 38.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.1e-37 160.2 211 60.2
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 3.6e-37 159.5 266 41.7
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 3.6e-37 159.5 263 41.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 4.6e-37 159.1 236 41.5
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 4.6e-37 159.1 258 53.9
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 6.1e-37 158.7 256 52.7
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 7.9e-37 158.3 240 44.2
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.0e-36 157.9 265 48.7
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.8e-36 157.1 222 57.7
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.3e-36 156.8 258 40.7
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 3.0e-36 156.4 258 50.4
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 3.9e-36 156.0 258 38.8
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 6.7e-36 155.2 220 43.6
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.0e-35 153.7 233 53.2
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.7e-34 150.6 224 41.1
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 3.7e-34 149.4 223 42.6
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 3.7e-34 149.4 245 51.8
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 6.3e-34 148.7 256 50.4
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 6.3e-34 148.7 266 48.5
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.1e-33 147.9 154 54.5
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 5.3e-33 145.6 206 45.1
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.3e-33 145.6 211 57.8
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 4.5e-32 142.5 142 56.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.9e-32 142.1 261 48.7
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.0e-31 141.4 257 48.2
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.3e-31 141.0 247 45.7
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 5.0e-31 139.0 214 42.1
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 4.2e-30 136.0 129 55.0
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 9.4e-30 134.8 145 51.0
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 1.6e-29 134.0 246 50.4
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-28 131.0 232 40.5
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-28 131.0 232 40.1
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.6e-27 126.7 255 44.3
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 3.3e-27 126.3 247 43.7
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.7e-26 122.9 183 50.8
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 8.2e-26 121.7 241 39.0
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.8e-25 120.6 125 52.8
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 3.1e-25 119.8 188 55.3
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.8e-18 96.7 136 43.4
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.1e-17 91.7 233 29.6
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 2.2e-15 87.0 230 28.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.5e-15 85.1 79 55.7
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 7.2e-14 82.0 100 48.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.6e-13 80.9 206 28.2
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.6e-13 79.7 226 27.9
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.2e-10 70.5 88 51.1
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.8e-10 69.3 86 45.3
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 6.3e-10 68.9 87 51.7
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 6.3e-10 68.9 85 48.2
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 8.3e-10 68.6 45 73.3
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.1e-09 68.2 205 27.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 8.5e-07 58.5 209 25.8
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 4.2e-06 56.2 80 43.8


User provided reference genes

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